MmuINT0010440 @ mm10
Intron Retention
Gene
ENSMUSG00000052374 | Actn2
Description
actinin alpha 2 [Source:MGI Symbol;Acc:MGI:109192]
Coordinates
chr13:12306274-12308986:-
Coord C1 exon
chr13:12308900-12308986
Coord A exon
chr13:12306362-12308899
Coord C2 exon
chr13:12306274-12306361
Length
2538 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTTTCTTGCTGTTATTATAGAAA
3' ss Score
6.18
Exon sequences
Seq C1 exon
AAATAGTCGATGGCAATGTGAAGATGACCCTGGGTATGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCAGTGGAAG
Seq A exon
GTAAAGTTCATGGGGGTGGTCCACGTGTCTAATTTGGGAACTGAGCTTACAAATTAGATCTTGAATCGGATATTGTGACACTGAGCAGTCACTTGCACGATCAAACGGGAGGCATCTAAATTGAGTCTTTAAAATTTTTATATTTGTATGGGAAAAGACCGAGGCAGTGCTATTCTATTCTTGCGGTGGAATCGCTTTGCAAGAGATGCACACATGTCTGGAGCAGACGGTGTTTTTAACATAAGTTTCTTTACTGCATATTGTACTAGGGCGTTCACAAATGTGCTAATGCAATAGGCAGAGGGTTTTCTTTCTCCTTTGTATTCTCTATCCTTCCCTCCTCTCTCCCCTGTCCCTCCCTCCCTATTTCTTCTTCCTTCTCTTTCTCTCTTCACTGGGGATTAAAACAGGGCCTTGCAATTGCTAAACACGTGTCACCACAGAGTCATCCCTTCAGTTCCCTCGGGCAAAGATCATTAGGCTTACAGCTAGAACACTTTAGTAGTATTTAGTAATATTAATAATAAAAGTTGGGTGTGGTGGTTGACACCTATCAACCTAGCATTCAGGAAGCTAAGACAGGAGGATCACAAATTTGAAAGCCCCTCAGGCTTTGTAGCCAGCCCACCCAAGCCTGTGTAACCCCTGTTTCACCCCTAAAGCATTCTTTACATTCCTTCCAAAAAAAAGAAGAAAGAGAAAGAGACAAGTTTTCCTAGCCCAGCTACAGTGTGGATCAGTCTTCAAAACAGTGTCTACTCTACAAAGTGGGTTTAGCTGTTTAGGTATTTAAATTTAGTGGCTAAAAACTGACACAATTATGACAAATTACTGTTTTTCAATAAATTGGGAACCTCCGGGAAGCATCCTGTTACTTTCCTTAGCATGAAGAAATGCACGGTAATAGAAGCACCCTGTGCAGGAGTTTTCAGATGTAGACTGTGTGTTCTTCAAACTGGCTGTCATTTCTGAGCCCGAATTGAGGTTTAAATGGCATTATCTCTTGGTTTGATGTTTTAGATGACATAAGTGGGTTTGGTGTTCTAAAAAGGGAATCACTTAAGTGAGTTAGAAAGTTCTCTAAGGGCACATGCTGCAGTCTTCTTGTCACCTAGTACAGTGAGCAGGGACGTGGCTTGTTAAAAAGATCTATTTTAGTTTTAATTATGTATATGCATGTGCAGGTGTTCTTGGGGGCCAGAAGAGGACATCAGATTCCCTGGAGCTGGAATTATAGGTAGTTATGAGCTGCCCAACGTGGGTGCTGGGAACTGAAACAGATCCTCTTCCAGAGCAGTAGCACTTATCTACTGAGCCTTCTCTGGTCTCCATCTCCAGAGGGTGGGTCTCAATGATTGACTACTGAGCCTTCTCTGCTCTCCAGCCCCAGTGGGCGGGTCTTAATGGTTGCTGGCTGATGAGTCACTAAAAGCCCCAGAAAGACCAACATCCGGAGTCCCTTCATCCTGGGAAGACGATAAGAAACACCCCACTTCTCCATACTTAGATCTTACCACTCAGGCTAGGTTAGCTGTTGGTTACCAAGTTAACAGAGGCTGACTAATTGGCAGCCCAGGTTACCCTTAAACCTATTCTGCCTGCTGTGATTTGAGAGATAAATAGGTACTTCTAATTTTCAGAATGCCAAGTTTAATTTGGATTTATTTACAAGAGGTGCTGCTGAGATGACTTGTCATCCTAGCCTGGCAGCCTGAGTTGGATTTCTAGGACCCACAAGGTGGAAAAAGAATACTGCCTCTGACCTCCACATGTGCACTGTGGCACATGTGCATGTGTACATGCACATACACACACACACACACACACACACACATGCATTCACACTCATACACAACTTTTTAAAAATTTAAAGAAATAAATATTTAAGAAAAAGATTTAATTCCAGTGATCAGTTGTTAGGCTAAAAGGCACAGTAATACATTTTATTCAAAGAGGAAAGAAAGAAGAACAGTAATGATGAGGGGCTGAGACAGGGGAGGAGGGCCGTACTGGGCACACGGCACTGGTACACACTGATAAACATGGATGCTTTGTTTAGAGTTAGGGTCTGCCTAGCTCTCCTCTTGCCCTTCCTCTTTGGAGTGGGGGTTGTAGGAAGTCCACCAGATCTCCCTTCAGTCAGCATTACAGGGACTTAGGCTTTTGTCCGGCTTGTTGTTTTTGCTTTTTTATATTTTTTGTTGTTACTTGGTTTTCTCTTGGTAGATACTGAACTTAGGGCCATAGGAACACTAACCAGTAGCATTCTACTCATGAGCAACATCCCATAGCCCTGGTTATAATTTTGTAATTAGTGATAAGAGAATTTAAAATCTAATTTTTTTTCAGGTGTAGCTATGAGAATGGCATTGTCTGTGTTTCCCCTAAGTGACTTTTCATATATCCAAAATAAAATAGCCTTTTTTTAGCACACCCCACCACACACACACACACACACACACATACACACACACACACACACACACACACACACACACACACATACACACACACACACTTTTCTTGCTGTTATTATAG
Seq C2 exon
AAACATCTGCCAAAGAAGGGCTGCTGCTATGGTGTCAGAGGAAGACAGCTCCATACAGAAATGTGAATATCCAGAACTTCCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052374:ENSMUST00000064204:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(20.6=70.0)
A:
NA
C2:
PF0030726=CH=PU(24.0=83.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types