GgaINT0083086 @ galGal3
Intron Retention
Gene
ENSGALG00000008550 | F1NYZ1_CHICK
Description
NA
Coordinates
chr3:17032677-17036589:-
Coord C1 exon
chr3:17036499-17036589
Coord A exon
chr3:17032724-17036498
Coord C2 exon
chr3:17032677-17032723
Length
3775 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CATATTTTTTTATCTTTCAGGTT
3' ss Score
12.05
Exon sequences
Seq C1 exon
GTGAAAAATGTGTTTTGTATGAAGGCGAAGGAAGGCAGGAAAAAATCAATACGCGCCTTAGTGGCTGTTGGAAATGGTAAAGGGGCTGCAG
Seq A exon
GTACGTGTTTGCTGTATGTGAAAGAGTCCAAGTTAATCATTGCTTGTAACAGAGCTTCTGAAGATGTGTGCATCTGAAGAAACGTTGTATGCCAGAAATAAAACTAAGCTTTTTTCCATTTATTTTTCTTATTATTTCCTCCTTAGGCACGAGGATACTTCTTTGTAAGTATTACTGCTTTTAGTTACAAAGTAAGGACTGACTTACTGGTACTCTCAGGTAGCTTGGACTGTCTTTATTCAGAAATTTGTCATTAATCTGTTAAATCAGAAGACCATGAATTTCCTTCAGACTCCTCAGGAAGCTCTTTTTATTGAAGTTAATCCTAAAAAAAAAGCCAGCAAACCACACTTTCCTACAGATTTCATGTTTGTACTTCTAAGGAAAAAGAACACTCGTGGCTGTTTGAGTCTATTCCTGTAGTAACTTCAGTGATCTGCAGTTTGACCCATTTATAGGTTTTCTCCATTACAATTTTTTATAAAGGTCTTTTCAGCAAGCAATTTGAAGTCCAACCATAGAAATGCTCTCTGTGGCATAAAGGAAATGGGACAAATCAAAAGAAATGTGATATTATGAAAGATCTAATAAAAAAGAGCTATGAACAGAGCTCTTTTCTTTCTCAGCACAGGCCAGAGAAAGAGTACTGATCAGAGGGATTCAGTTTAGTTTTGCTCTCCTTGAAGTATTTAAGCACAATTATGCTGAACAGTAGCTCTTGCCAAGCTATCTCTAGAAGTAATCATACCAAGAGGATACCATCTAATATTATGGTACTGCTTCATACATTAGTAAGATCAATTAGAGCAAAGACAGACAACTGAGGACTGGCACATTGTGCCATGTTCCTCTCCTCAGAAGTTAATATGTTCTAAAAGTAATTGCAATTCCTACTTCAAGTAAAGTGCTTAACAATCTTGGCCAGAAGAGCCTTTTTGCTGGTCAGATTTGGGCTTTACAAAATAAGGAGAACAAGAATTCCACTCTGCTGCAGCTTCTTAAGGGAATGTATGCGGAGTAGATTTGCCCATTGGTTTAGCTCAGTTGGTTAACGCTGTTGGTGAGGAAGTAGTTTGTGTTATGGTGACAAATTTTATAAAGGAGGAGATATCATTGTAGAACAAAACAACAAAAACAACAAACAAAACAAAAGGGAGAAAAGAAAACGAAACTGAAGTTTGCCAAAACGTTTGTGCGCCTTCTGTGGCCTGCTGATACATCTGTTGGATGGATGGGATCCAATGTGTTTTCATAACAGACAGATGAAATTCAAGACATGGGTAGACTTGGCCTTTTATTTCTTAGAAAATCACTTATTGGGCATCTTTTGAGCCTTAGAAATTGTTACATTGATGTTTGTAGTATATGCGCTCTTTGTGCCAGTGATGTGCCTGCCCAATAATAGCGCTGACCTCCTATGTTCTTGTTTCTGTGCCACTTCTATGATTCACGCTGCATATGCTATGTGCACTTACCTTTCACGTGCTCAGTTACAGGAGGCCAGGCAAAGCTGACAAGCAGATAGTAGTACTTCAGTGCAGCCACACAGCAAAGCCTTTGTATATGGGATGTTTCTGGATAAATAATACTTAACAATATTGCGTACTGGTAAAGCAAAAAGAGATGGTCTGTAATGTGGTGGTGTTAAACTTGCTCTTTAAAGATCTCTAAAGGCTAGCAGATGCTCACAGCTGAAGTAGGAGACAGCATGCTTGGAAAGTGCTGTTTCTTACAGGTTTTCTGCTTCTTTTTGTCAGTTACAGAAGTTACCAAGCATCCTTCATCTTGCGAGAAGTGCTTTGTTTTAGTAGCCACCATTTGAGAAGGGTCAGAATCCAAGCCTGTGGGATAGATTGTCAGGACTGCTTATAAAAGCAGTGCTAGAACCATTTAATTGTAATATCGCTTAATTGCAAAGGGATCCTTAAAAGAACTGCAAAACCACTCTGTACTACAGTGAGTTTCCAGTTGTGGTGTTTAGGAAATAGCATACATCTTTCACTGATTTTTTTTCATGTAATTTTTTTTTCCCCCAGGCTATGTCTTATTTAAGAAGGATCCTTGAATGTGCTAAGTTCTTCTCCCTAAGGAGATAGACTTCTTTATGTAAATACAAACCAATGTACATTAAAATTCCTATTACACCTCAAATAGACTTGGAGATAAGAAGCCTGTGCAGAATTAAAAGCAGCCTCTGCTTAAAAGGAAAAAAGTGAATAGCTATAAAGTAAATAATCCAAATAATAGAGACAGGAATATGGGATGGTGACAGAGTACAGGAAATTACATTTGCATTGTTATATGACTGTACTAAAGAAAATTCTATTTTCAGTATATGTGCAGAGCTTCCAACTGCTGGATGTAAATAGTCTCTTTTTATTATGGGCTTGATAGATATCTCTGAGATGTACGTAGGAGCTTTATTAAGACAACCTTATTTGCAGTTGAGTACAGTTTTGCAGAACTTCATCTATTTGAGAGATTCAAATCTAGATGGGCTCCTCAAGGTGAATTTTAGCTATAGTTTAAGGGAGAAGAAAGGAATGTATACACAGAGCAAGGTATGTTCTCAGCAGAACACAGTTGCTCTGAAAAGCTCTGCCTACCTTTTCTTTGAAACGCATTTTCATGAAACATTATCATGTCCTTGAAGGCACACTTTAATCCTATGTGAAGAATGATTGAATAGAGCTTGACCAAGTGATCTCACTTTCAGAGCTTTCTAATGTTTTGTGTGACTTCATTGGTAACACATTAGTAATGAGCTGTGCGTGTGCATAAAAGGATAGCACAGTTTGCTTGCATTTTCTTCTGCAGGAGTTAAAAAGCAACGGAGAGTTCCTTGGCATGTGGTATGTGCATAGGGAAAACTATCAACTGACAGCAAGTGCTACCCCTTGACCTTCTGTTTCTTACGCTATCAACTTCCAGACTTGTGGTGATGTCCTGTATTGCTTGCAGCACCACAATAGTTGGGATGCTTTCTTAGATCTCTTCCAGTCCATTTCTCCTGCAATATCTGCAAGAAATCAGTGAGGCGATATTGGCCAACAAGTCCAATTCCATTGATTTTCTTTTTGTATGAGGTGCCATGATACAGAAAACCCTGAGCCCCAGCTGACACAACAGAAACATCAGAAGACCAGAAAAAGCTTTAAAAAAAAAAAGTGAATATTTTTAACTCAATGTGTCTTGACAGCACTGGACTTCAGAGTTCATAAATAATGGTTGTCACATCCTCGTATTCATTTCATATGTTCAGTTGATGCCCCACTTTTCTCTGTTCTTTGGGAATATATATTTTGCAAATACACAATTCTGTTTATAAAACCTGTTCTTAATGTTTTCTATTTTGCTGGTATAAACCCAGTCTCCTCTGTTTCTAGGGCTTTCAAGGTGCTGTTTGAACAGAGGTAGTTCATACGTCTGTCAGCTTTCTTTTTTCCTTCCTTTTAAACAGAAGACTGTTTTTATTAGATGAAGCAGCAGTCTCTATTCAGTTGTATGAAACATGTACAGAGCAAATAAAAGAATTAAGCCTTGTTTATCTTTGTTTAACAAGCAATTGACATCAAATCATTTGATAGTCATAACTCGAAAGTTCTTACTTTCTAAATGTGGTTTTCTCTGGGACTTTTTCTGAGTATGATGGAGTGGAAATAACAGGTAGTAGTCTTGGTTGTGAAACTCACTGTTTTTTTTTTTTCCCCCCTCTTCTTTCTCAAGACACTGCTTCATGCATCTCTCAGTAATAACATATTTTTTTATCTTTCAG
Seq C2 exon
GTTTTGCACTGGGGAAAGCAGGTGACAGGATGAACGCTTTACGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008550:ENSGALT00000013928:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033315=Ribosomal_S5=FE(44.1=100)
A:
NA
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]