GgaINT0083086 @ galGal4
Intron Retention
Gene
ENSGALG00000008550 | MRPS5
Description
28S ribosomal protein S5, mitochondrial [Source:RefSeq peptide;Acc:NP_001186319]
Coordinates
chr3:15457675-15461587:-
Coord C1 exon
chr3:15461497-15461587
Coord A exon
chr3:15457722-15461496
Coord C2 exon
chr3:15457675-15457721
Length
3775 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CATATTTTTTTATCTTTCAGGTT
3' ss Score
12.05
Exon sequences
Seq C1 exon
GTGAAAAATGTGTTTTGTATGAAGGCGAAGGAAGGCAGGAAAAAATCAATACGCGCCTTAGTGGCTGTTGGAAATGGTAAAGGGGCTGCAG
Seq A exon
GTACGTGTTTGCTGTATGTGAAAGAGTCCAAGTTAATCATTGCTTGTAACAGAGCTTCTGAAGATGTGTGCATCTGAAGAAACGTTGTATGCCAGAAATAAAACTAAGCTTTTTTCCATTTATTTTTCTTATTATTTCCTCCTTAGGCACGAGGATACTTCTTTGTAAGTATTACTGCTTTTAGTTACAAAGTAAGGACTGACTTACTGGTACTCTCAGGTAGCTTGGACTGTCTTTATTCAGAAATTTGTCATTAATCTGTTAAATCAGAAGACCATGAATTTCCTTCAGACTCCTCAGGAAGCTCTTTTTATTGAAGTTAATCCTAAAAAAAAAGCCAGCAAACCACACTTTCCTACAGATTTCATGTTTGTACTTCTAAGGAAAAAGAACACTCGTGGCTGTTTGAGTCTATTCCTGTAGTAACTTCAGTGATCTGCAGTTTGACCCATTTATAGGTTTTCTCCATTACAATTTTTTATAAAGGTCTTTTCAGCAAGCAATTTGAAGTCCAACCATAGAAATGCTCTCTGTGGCATAAAGGAAATGGGACAAATCAAAAGAAATGTGATATTATGAAAGATCTAATAAAAAAGAGCTATGAACAGAGCTCTTTTCTTTCTCAGCACAGGCCAGAGAAAGAGTACTGATCAGAGGGATTCAGTTTAGTTTTGCTCTCCTTGAAGTATTTAAGCACAATTATGCTGAACAGTAGCTCTTGCCAAGCTATCTCTAGAAGTAATCATACCAAGAGGATACCATCTAATATTATGGTACTGCTTCATACATTAGTAAGATCAATTAGAGCAAAGACAGACAACTGAGGACTGGCACATTGTGCCATGTTCCTCTCCTCAGAAGTTAATATGTTCTAAAAGTAATTGCAATTCCTACTTCAAGTAAAGTGCTTAACAATCTTGGCCAGAAGAGCCTTTTTGCTGGTCAGATTTGGGCTTTACAAAATAAGGAGAACAAGAATTCCACTCTGCTGCAGCTTCTTAAGGGAATGTATGCGGAGTAGATTTGCCCATTGGTTTAGCTCAGTTGGTTAACGCTGTTGGTGAGGAAGTAGTTTGTGTTATGGTGACAAATTTTATAAAGGAGGAGATATCATTGTAGAACAAAACAACAAAAACAACAAACAAAACAAAAGGGAGAAAAGAAAACGAAACTGAAGTTTGCCAAAACGTTTGTGCGCCTTCTGTGGCCTGCTGATACATCTGTTGGATGGATGGGATCCAATGTGTTTTCATAACAGACAGATGAAATTCAAGACATGGGTAGACTTGGCCTTTTATTTCTTAGAAAATCACTTATTGGGCATCTTTTGAGCCTTAGAAATTGTTACATTGATGTTTGTAGTATATGCGCTCTTTGTGCCAGTGATGTGCCTGCCCAATAATAGCGCTGACCTCCTATGTTCTTGTTTCTGTGCCACTTCTATGATTCACGCTGCATATGCTATGTGCACTTACCTTTCACGTGCTCAGTTACAGGAGGCCAGGCAAAGCTGACAAGCAGATAGTAGTACTTCAGTGCAGCCACACAGCAAAGCCTTTGTATATGGGATGTTTCTGGATAAATAATACTTAACAATATTGCGTACTGGTAAAGCAAAAAGAGATGGTCTGTAATGTGGTGGTGTTAAACTTGCTCTTTAAAGATCTCTAAAGGCTAGCAGATGCTCACAGCTGAAGTAGGAGACAGCATGCTTGGAAAGTGCTGTTTCTTACAGGTTTTCTGCTTCTTTTTGTCAGTTACAGAAGTTACCAAGCATCCTTCATCTTGCGAGAAGTGCTTTGTTTTAGTAGCCACCATTTGAGAAGGGTCAGAATCCAAGCCTGTGGGATAGATTGTCAGGACTGCTTATAAAAGCAGTGCTAGAACCATTTAATTGTAATATCGCTTAATTGCAAAGGGATCCTTAAAAGAACTGCAAAACCACTCTGTACTACAGTGAGTTTCCAGTTGTGGTGTTTAGGAAATAGCATACATCTTTCACTGATTTTTTTTCATGTAATTTTTTTTTCCCCCAGGCTATGTCTTATTTAAGAAGGATCCTTGAATGTGCTAAGTTCTTCTCCCTAAGGAGATAGACTTCTTTATGTAAATACAAACCAATGTACATTAAAATTCCTATTACACCTCAAATAGACTTGGAGATAAGAAGCCTGTGCAGAATTAAAAGCAGCCTCTGCTTAAAAGGAAAAAAGTGAATAGCTATAAAGTAAATAATCCAAATAATAGAGACAGGAATATGGGATGGTGACAGAGTACAGGAAATTACATTTGCATTGTTATATGACTGTACTAAAGAAAATTCTATTTTCAGTATATGTGCAGAGCTTCCAACTGCTGGATGTAAATAGTCTCTTTTTATTATGGGCTTGATAGATATCTCTGAGATGTACGTAGGAGCTTTATTAAGACAACCTTATTTGCAGTTGAGTACAGTTTTGCAGAACTTCATCTATTTGAGAGATTCAAATCTAGATGGGCTCCTCAAGGTGAATTTTAGCTATAGTTTAAGGGAGAAGAAAGGAATGTATACACAGAGCAAGGTATGTTCTCAGCAGAACACAGTTGCTCTGAAAAGCTCTGCCTACCTTTTCTTTGAAACGCATTTTCATGAAACATTATCATGTCCTTGAAGGCACACTTTAATCCTATGTGAAGAATGATTGAATAGAGCTTGACCAAGTGATCTCACTTTCAGAGCTTTCTAATGTTTTGTGTGACTTCATTGGTAACACATTAGTAATGAGCTGTGCGTGTGCATAAAAGGATAGCACAGTTTGCTTGCATTTTCTTCTGCAGGAGTTAAAAAGCAACGGAGAGTTCCTTGGCATGTGGTATGTGCATAGGGAAAACTATCAACTGACAGCAAGTGCTACCCCTTGACCTTCTGTTTCTTACGCTATCAACTTCCAGACTTGTGGTGATGTCCTGTATTGCTTGCAGCACCACAATAGTTGGGATGCTTTCTTAGATCTCTTCCAGTCCATTTCTCCTGCAATATCTGCAAGAAATCAGTGAGGCGATATTGGCCAACAAGTCCAATTCCATTGATTTTCTTTTTGTATGAGGTGCCATGATACAGAAAACCCTGAGCCCCAGCTGACACAACAGAAACATCAGAAGACCAGAAAAAGCTTTAAAAAAAAAAAGTGAATATTTTTAACTCAATGTGTCTTGACAGCACTGGACTTCAGAGTTCATAAATAATGGTTGTCACATCCTCGTATTCATTTCATATGTTCAGTTGATGCCCCACTTTTCTCTGTTCTTTGGGAATATATATTTTGCAAATACACAATTCTGTTTATAAAACCTGTTCTTAATGTTTTCTATTTTGCTGGTATAAACCCAGTCTCCTCTGTTTCTAGGGCTTTCAAGGTGCTGTTTGAACAGAGGTAGTTCATACGTCTGTCAGCTTTCTTTTTTCCTTCCTTTTAAACAGAAGACTGTTTTTATTAGATGAAGCAGCAGTCTCTATTCAGTTGTATGAAACATGTACAGAGCAAATAAAAGAATTAAGCCTTGTTTATCTTTGTTTAACAAGCAATTGACATCAAATCATTTGATAGTCATAACTCGAAAGTTCTTACTTTCTAAATGTGGTTTTCTCTGGGACTTTTTCTGAGTATGATGGAGTGGAAATAACAGGTAGTAGTCTTGGTTGTGAAACTCACTGTTTTTTTTTTTTCCCCCCTCTTCTTTCTCAAGACACTGCTTCATGCATCTCTCAGTAATAACATATTTTTTTATCTTTCAG
Seq C2 exon
GTTTTGCACTGGGGAAAGCAGGTGACAGGATGAACGCTTTACGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008550:ENSGALT00000013928:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033315=Ribosomal_S5=FE(44.1=100)
A:
NA
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]