RnoINT0094545 @ rn6
Intron Retention
Gene
ENSRNOG00000015192 | Mrps5
Description
mitochondrial ribosomal protein S5 [Source:RGD Symbol;Acc:1308318]
Coordinates
chr3:120177282-120179059:+
Coord C1 exon
chr3:120177282-120177372
Coord A exon
chr3:120177373-120179012
Coord C2 exon
chr3:120179013-120179059
Length
1640 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CTGTGTCTTTTCTTTGAAAGGTT
3' ss Score
9.69
Exon sequences
Seq C1 exon
GTAAGAAATGTTTTCAATATGACAGCAAAAGAGGGAAGAAAGAAGTCAGTCCGTGTCCTGGTTGCTGTTGGGAATGGAAACGGTGCTGCAG
Seq A exon
GTAAATGGATGGTGGTGGTTGGGCTTGACCTGGCCTTGCTGAAAAGAGAGTCCCATGTTGCTGGCCAGATCTTTCCTCCTGATTACATCTTTTAGTGGTTTGGGCTTACGGACCCAAATTTTCACTATGTAACAAAACCCAGCACACCTCGTTTGTTACTTTTGCTGCTGGTGCAGGAGTAGGGGAGACTTCTTCAGTAAGGTCACTACCCTTTCAGGTGCTGATAAGGATGTCAGGTCGCCTCCCATCATACCCCTGTCTGACACATCAAGTTTCAGTGATTGACAGCATTCTGTGAGCGCCATACCTTTTAGTTTTGGTTTGCACATCTTTAACTAGGAAGTGTGGGCACAGTTTTGCTTGTTTATTGATCATGACATTTTCTTTTGAGCTTTGCCAGTTCCTGTATTTGGCCTAACTCTGTATTTATAGAGTTTTTCCTACCTGATCAGCATAAGCTTTTTATAAGTTAAAGACATCAGCTCACTGCCTTTCAGATGCTTTGACTTAGTTTTAGTTTCCCTCTTCACAGTGTTAAACCCAGGGATGTTGTAAGCTTTTACATAGCAAACCTGTCACTCTTGCATCACTTCCACCTGTGCTTTGGTTAGAGTCTCTGTTTGGAGATTGTAAATAAATCTGCTCATATTATTCTCTGCGATATGTTTTGTTTTATTTATCTGAAAATTAGAAAATGGAATTTCTCTGTCCGGGTCTCAGGTCTCTTGCGTTTCATGTCTTATGTAAAACCTACAGAGTCACAGTCACTGAACTTCACACTCAGTAGTTGGCAGTGACAGCAGATGCCAGGAGCTTTCCAAGAACCTACGCAAAACTTTACTTAAAATACTCTCGGGTTGAAGGACCACTGATCTCATCTCTGGCTAAATTACAACGTGATTCATCTTGACAGTCCCAGTGAGAGCAGGTTGTCCGTCCGGAGCTCCTCACTGTAGTCTGTTTCCGGGGTGTGCAGGATCATTTGCCTAGTTTTAAAACTGGAGTGCAGGGACTGGCAGGATAGCTCAGGGGTTCAGGTCACTTGCTGCTCTTCCAGAGACTAGTGTTTAGCTCCTGGTGTCTGCATGGCACTCACAATCATTTGTAACTCTAGGTCTAGGGGATCTGACGCCTCTTCTGACCTCCTTGGACTCCTGCATGCATGTAGTTCACAGACATGCACTCACACACATACACAGAAAATTAATTAATTAATAGCCCGGAGCCTTTAATCCCAGAACTCAAGGAGGCAGGGGCAGGCTGATCTCTGAGTTCAAGGCCAGCCTGAGCAGCAGAGTAAGTTCCAGGATAGCCTAGGGTTACACAGAGAAACCCTATTTCACAAAACCAAAATATATAAATAAATTAATAAGCTAAGCTCACTTCACTTCAGTAGAAATTTATTGAAGGCAATGCAGTGCCTCTAATGTTAAATTTTATGAACATATTCAAAAGTGAAATGTTCACAACAGACCAGTAAGGGCCTGTGGCTCTGTGCTTGCTGGTTGTGGGAACAGCTTTTCTGTGGGTGGTGGGAAGATGGAATGCCTGGGAACAGTGGGAGCCCAACTGGGACTGAGGTGGAGAGCCTGTCGTGTGCAGGGCTGTCTATCTCCATGTCTGTGTCTTTTCTTTGAAAG
Seq C2 exon
GTTTTGCCGTCGGGAAAGCCGCTGACCGGGCAGACGCTTTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015192:ENSRNOT00000020451:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033315=Ribosomal_S5=PD(76.3=93.5)
A:
NA
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]