BtaINT0095308 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008241 | MRPS5
Description
Bos taurus mitochondrial ribosomal protein S5 (MRPS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001046123]
Coordinates
chr11:1902812-1905159:-
Coord C1 exon
chr11:1905069-1905159
Coord A exon
chr11:1902859-1905068
Coord C2 exon
chr11:1902812-1902858
Length
2210 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTTACTTTTTCTTTAAAAGGTT
3' ss Score
10.46
Exon sequences
Seq C1 exon
GTGAGAAATGTTTTCAACATGACGGCCAAAGAGGGAAGGAAGAGATCCGTCCGTGTCCTGGTCGCTGTGGGGAACGGCAGAGGAGCCGCAG
Seq A exon
GTGAGTGGGGGGTAGGATGTGAGGAGCTGGTGGTGGAGGGGGACAGGCATGGCCTGCCCTCAGCTGTGCACTCAGTGGCTTCAGGCTTTTCCCACTGATTGTCTTTTAGTGGCTTAGGCTCACAGACCTTGTGGTGAACCCAAGTAATTCCTTAGAGGGAAAAGAGAGATCTTCCTACACCTGCTTTTTCCCATGAGGACAGTGAATATTTTAAAAGGCTTAAGACACGATTGTATTATGTATAATAGTAAAAAAAAAAAAACTGGGGGTGGGGAGAGAGACAGTAAATATTGCACAATAGGGACACAGTTACCAGAAGAGTATATGTAACCAAGCATTGTGATACGCTATAGCCATTAAACAATTATGGGAAATCACTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGCAACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCATCTCCCGGAGTTCACTCAAAGTCACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCTCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTGAGCTTTAGCATCATTCCTTCCGAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAGTACCACAGTTCAAAAGCATCAATTCTTCGGCGCTCAGCTTTCTTCACAGTCCAACTCGCACATCCATACATGACCACTGGAAAAACCATAGCCTTGACTAGACGGGCCTTTGTTGGCAGAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTCTTCCAAGGAATAAGCGTCTTTTAATTTTATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCAAAAAATTAAGTCTGACACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTTTCCTCTTTCACTTTCATCAAGAGGCTTTTTAATTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTCCATATCTGAGGTTATTGATATTTCTCACAAAGTAATCATTAGGTCAAAGAGACAAACTAAAAACCACTTCATATAAGACTGATATAATCCCAGTTTTTAAAAAGTATGTTTATATGCAAAGAAAAGCCTATAAGGATTGGAAGAGTACACACTGAAAAGATTAAAAATGTTTAATTAGTACATTTGCCAGTTCTTCAAATTTCTTCTTGATACTCTTCAGTAGAGTTTCCACAATGAACATCTGTTTTTGAAATGTATACATGAATGTGTAAAGGGAAGAAAACTGGAAAACTGCCTATTTACATCCATACTGACACTTATAAAACGGGTATTTATAATACCTTATAGATAGAATGTTGCCAAAGGAAACGACTCTTTAACAGTTCCTTGGGCTTCCCTGGTGGCTCAGAGGTTAAAGCATCTGCCTCCAATGCGGGAGACCCGGGTTCGATCCCTGGGTCGGGAAGATCCCCTGGCAAAGGAAATGGTAACCCACTCCAGTACTCTTGCCTGGAGAATCCCATGGACGGAGAAGCCTGGTAGGCTACAGTCCATGGGGTCGCAAAGAGTTGGACACAACTGAGCAACTTCACTTTCACTTTTCTTCCCAGAAATTCTTTGTTCCTATACCACCATATATTTTCTGTAGAAATGAGTTTGTTTGTTTATTTTGGCCGTCCTGGGTCTCTGTTGCTGCGCGGGCTTTGCGCTACATGTGTTGAACAGGGTACTCTAGTTGTAGTGCATGAGCGCCTCACTGCAGTGGCTTCTCGCTGCAGAACGTGGGCTCTGGGTGCCGTGGCTTTAGCGGGTGTGGCTCCCGGGCTGTAGAGAACAGACTCGGTAGTTGTGGTGCACGGGCTCAGCTGCTCCACCGCATGCGGGATCTGCCCAGATCAGGGATCAAGCCTGTGTGTTCTACAGGCAGATTATTTACCACTGAGCCACCGGAGAAGCCCAACAGTGAGCTTCTTGTACATGTCATTTATTGTACTTTTGCAAGTATATTGATAGGGGAAATTTCTTGCAGTGAAATTGCTACCTCAAATATTTTTACTTTTTCTTTAAAAG
Seq C2 exon
GTTTTGCCATTGGGAAAGCCACTGAACGGGCAGATGCTTTCAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008241:ENSBTAT00000010843:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033315=Ribosomal_S5=FE(44.1=100)
A:
NA
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development