DreINT0097934 @ danRer10
Intron Retention
Gene
ENSDARG00000062209 | mrps5
Description
mitochondrial ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-060929-264]
Coordinates
chr17:22091768-22093258:-
Coord C1 exon
chr17:22093168-22093258
Coord A exon
chr17:22091815-22093167
Coord C2 exon
chr17:22091768-22091814
Length
1353 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTTTGTTCACTTCACTGCAGGGT
3' ss Score
8.47
Exon sequences
Seq C1 exon
CTCAAGAGTGTGTTTACTGTTACACCCAAAGAGAGCAGGAAGAGATCCATCAGTGCTTTGGTGGCAGTGGGCAATGGAAATGGAGTCGCAG
Seq A exon
GTAAATTTGATGGAAACAATTATAATAAAGACAATTATTATAAAGACAGTACATGAAAATGGTTAGTCTTTCTGGATTTACAAGATTTATTTGGGACGGGTTTGAGTGAAATGTTGATTTTTGTTTATTATATAAAAGTCTTAGATTTTTATTTCAAATGCAAATATTAAACATTAATTTAAAGATTTTTTTTAAAGAAAATATCAATTGACCATAATTAAAAATGTTTTTATGTGATATAATTAAAAATCAGAGAGAGAGAGAAAGAAATATCATGTATTATTATTTTTTATAATGTTAAATAATAATTATTTAGATAATAAATGTAATATTTGTTTATTAATATTAGTTTATTATTATAAATATAAATATAATATTATTTTTATCACGTATGTTGTGTATTGGGCGACACAATGGCTCAGTGGTTAGCACTGTTGCCTCAGAGTAAAAAGGCCGCTGGTTTGCATCCAGGCTGGGTCAGTTGGCATTTCTGTATGGAGTTTGCATGTTATTGTATGGGTTTCCTCAGGGTGCTCTGGTTTCCACCACAGTCCAAATACATATGGTATAGGTGATTTTAATTGACTAGTGTATAAGTGTGTCTGAGAGTATATGGATGTTTCCCAGTACTGGGTTGCAGCTTGAAGGGTATCCACTGTGTAAAACATATGCTGGGTAAGTTGGCGGTTCATTCCCCTAATGAATAAGGTAAGTAAGTAAGAATAAGGTAGTAAGCTGAAGGAAATTTAATAAATGTATATTGTGTATTCTAATATATGAATATATTTTTCACTTTAGTTTTTGTAATGTTTTTTGTTATTGCCACTCTTTATTTATTTATTTATTTTTTTTTTTTTAAATTAAATTCGCAGGTTTTGCTGGTTCCAATTCAGAAATTTTCATTGCCAATCTCAAGCCAATTGTAATCATTTGTTTTGGTTCAATTTGGAATTTCCCCAACCATTGCAGAGCCGGGGGGAATAGAGTGAGCGCTCCAGCTTGGCCCCACCCTGTTCCATTATTGCCACTCTCAACAGTGACCTTTATGTCTAAAAGTACAAAATATATAATAATTATACATATTTAAATTATTTCAAAGAATTACTTAACTATTTTAATACTCTAGCTACTTTACACCCTGCATCAAGTGAGGCTATACAAATCAAACATATGATAAAACTGTATGCCTCTGTGCATTATTAAGTCTGGCTTATTCAGGCAAAAAAAAAAAAAACAACTTTAGCAAATATGCAGATTTGCACATCTCAGGTCTGTAATATATGGAGCATGGCAAAAGTTTAATAAAGTAGCCATAATCAGGGTTAATTGGCTGTTTTGTTCACTTCACTGCAG
Seq C2 exon
GGTTTGCACTGGGGAAAGCAGCAGACCGGACCGCCGCTCTCAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062209:ENSDART00000089689:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033315=Ribosomal_S5=FE(44.1=100)
A:
NA
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]