MmuINT0100991 @ mm9
Intron Retention
Gene
ENSMUSG00000027374 | Mrps5
Description
mitochondrial ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1924971]
Coordinates
chr2:127423922-127425794:+
Coord C1 exon
chr2:127423922-127424012
Coord A exon
chr2:127424013-127425747
Coord C2 exon
chr2:127425748-127425794
Length
1735 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
CTGTGCCTTTTCTTTGAAAGGTT
3' ss Score
9.88
Exon sequences
Seq C1 exon
GTAAGAAATGTCTTCAATATGACAGCAAAAGAGGGAAGAAAGAAGTCGGTCCGAGTCCTGGTTGCTGTTGGGAATGGAAATGGAGCTGCAG
Seq A exon
GTGAATGGGGTTGGGGTTGGGGGTGGGGGATTGGGCGTGGTCTGGCCTTGCTGAAAACAGACTCCTATGTTGCTGGCCTGGTCTTTCCTCCTGGTTACATCTTTTAGTGGTTTGAGCTCACAGACCCAGATTTTTAGTACATAACAAAAACCCAGCAGATTCAGTTTGTTATAGTTTTGCTGGTGTAGGAATAGGGAGACTTCTTCTTTCAGTAAGGTTGCTACCCTCTTATGTGTTGATAAGGATCGTCAGGTCACCTCCCACCACACCCCTGTCTGTGACACTGTCAAGCCTCAGTGATTGACAGTGTGATGTGAGCATCGTACTCAGTTTTGATTTGAGTATCTTTAACTAGGAAGTGTGGGCAGTTTGGCTTGCTTATTGATCATGCCATTTTCTTTTGAGCTTTGTCAGCTCATGTGTTTGAATGTCATAGAGCGGTGGCTGTTTTCCTACCTGACTACCATAAGCTTTTTATAAGTTGAAGACATATCAGCCCACTGCCTTTCAGATGCTCTGACTTAGCTTTAATTTCCTTCTTCACAGTGTTAAATCTGAAGATGCCGTAAGCTTCTATATAACAAACCTGTCGCTCTCATACTACTTCCACTATGCTTTGCTTAAAGAGTCTCTGTCTGAGGACTGTAAATAAGTCCGTTTATATTATTCTCTGCGATACCTATGTTTTGTTTGTTTTATTTATCTGAAAATAGAAATACAATTTCTCTGTCCTGGGCCTCAGGTCTCTTGCGTGTTTCATGTCTTACAGATGATGCCTCCCTTTGTATAACTTAGAAAGTTACAATTATTGAACTTCTTATGGAACTTCCCATTCAGTAACTGGCAGTGACAGCAGATGCCAGGAGCTTTCCAAGAACCTATGCAAAACTTTATTTAAAATAATCACAGGTTGAAGGACCACTGATGTCATCTCTGGCTAGATGAAAACGTAGCGTCGGCTTGACAGTGCCGTGAGAGCGTGTTGTCACTCTGGAACAGTGCTTCCCGCCTGCTGCTCACTGTAGTCTGTTTCCAAAGGAGTTCAGAATCATTGCCTCGTAACTTAGAACGTTTTAAAAACTGAGTGCAGGGGCTGGCAAGGTAGCTCAGGGTCAAGAGCACTTGCTGCTCTTTCAGAGACTAGTGTTTAGTTCTCGGTGCCTGCATGGCAGCTCACAACCATTTGTGACTCCAGTTCTGGGGATCTGACACCTCTTCTGACCTCATTGGACTCATGCATGCATGTAGTTCACAGACATACACTCACACACATACACATCAAATTAATTAATTAATAGCTCAGAGCCAGGCATGGTGCACACTTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCTGATGTCTGAGTTCAAGGCCAGCCTGGGCAGCAGAGTAAGTTCCAGGGCTGCCAGGGCTACACAGAGAATCCCTGTTTCAGAAAACCAAAATATATAAATAAGTGAATAACTTAAGCTCACTTCACTTCAGTAGAAACCTATTAAAGGCAATGAGGTGCATCTAATGTTGAATTTATTAACATACTCAAAAGTAAAATGTTCAAAACAGACCAGTAAAGGCCTGTAGCTCTGTGCTTGCTGGTTATGGGAGCAGAGTTTCTGTGGATGATGGAAGATGAAATACTTGGGAACAGCAGGAGCCCAAACAGGGACTGAGGTGGGAAGTGTGTCGTATGCAGAGCTGATTCTGTCTCCACATCTGTGCCTTTTCTTTGAAAG
Seq C2 exon
GTTTTGCTATTGGGAAAGCTGCTGACCGGGGAGACGCTTTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027374-Mrps5:NM_029963:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033315=Ribosomal_S5=FE(44.1=100)
A:
NA
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: