HsaINT0105351 @ hg38
Intron Retention
Gene
ENSG00000144029 | MRPS5
Description
mitochondrial ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:14498]
Coordinates
chr2:95101677-95104730:-
Coord C1 exon
chr2:95104640-95104730
Coord A exon
chr2:95101724-95104639
Coord C2 exon
chr2:95101677-95101723
Length
2916 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TTTTGCTTTTTTGTTTAAAGGTT
3' ss Score
10.39
Exon sequences
Seq C1 exon
GTAAGAAACGTTTTCACTATGACTGCGAAAGAGGGAAGAAAGAAATCGATCCGTGTCTTGGTGGCTGTGGGGAACGGAAAAGGAGCTGCAG
Seq A exon
GTGAATGGGGAGTGATGGCATCACAGTGGCGGTGGTGTGCAGGGAAAGGCGTGGCACGGGCCATGCTGTGGAGCCCATGGGCTCATGCTGCTGGCCGGACTTTTTCCATTGATTAAACCTTTTAGTGGTTTGGGTTCACAAAGCTTGTGGTAAGTCCATGACTTCCCTTAGAGAGAAAAGAGAGAATAGATTCTACTGTACTTGCCTTTTCCTCTGAGGAAAAGGAATATTATAAAAGGCTGAAGACATTATTTTATTATGTATAATAGTGGAAAATTAGGGAGAAAAACTAAATGTTCAATAGGGCCATGGTTATAAAAACAGTGTAGCCATACACTGTAATATTCTGTATCCATTAAAGAATTATGGGAAATTAGTTTTAAAATAATGCTAAGTTAAAAAAAAAAACACAAAAACGTTATATAAGACCATATAAAATCCTAGTTTTGTTTTTTTCTTTTTTAAAAGTATATTTATGTGCCAAGAAAAGACTGGAAAACTGTACACTGTAAAGGTTAATAGTGTTTACTCCAATTAGTAGGTTTGCTGATGATTTAAATTTTCTCCTATGTATAGTTAACATAGTGGACACCTGTTTTTGAAATGTATTCATGTCTGTTGAAGGAAAAGAACACAGGAAAATGGCCTAGTTAGCCCATACTGACATTTAACAAAAGTAATACATATATATATAGTATGTGGCCAAAGGAAACCAGGCCTAACAGCTACTTTTGTAATTTTCCTAAATTTTATGTTCATATTATTATCATACATCTTTAAAAAATTTACATAAAGGGATCACATTATAGCCATAATTTTGCACCTTGATTTTCTGACATAGTATTATATTCAGAGATATTAATACTCAGATTAACATAAACATTCTCCTTGATTCGTTGTACTGGTTGCAAAGTGTTCCATTGTGCATGGATAATTTTTGTAACCTTTTCCCTACTGCTGAATATTTAAGTTGTTTCCAAATTTTTACTAATTATAAAAAACTGTACAGTTCGTTTATGTGTAATTTGTTTTACTTCTGCAAGTATATCAATAGGGGAAACTTCTTGCAGTAAAATTGCTGCCCCAAGGTTATATGTATTTTAAGTGCTGATAAATATTCCTAGATTGCCTCCCCACAAAAGGTTGCATCAATGTCTGTGTTTCTCTACACCATCTCACCCTTGCCAACTTCGGGTTTCATCAGACCTTACTGATTGTCAGTATGATCTGTGAAACAAATCTCTCAGTTTTGATTTGCATTTTTTAAATTATGAGAGCTTGAACACCATTTTACATGTTTATTGGCTGTTGTTATTTCCTTTTTGAGATCTGTTCGTTATATGCTTTGCCCGTTTTTCTGTTGGGTGGTTATTATTTTTCTTATTGAATGGTATAAGCTCTTTGTAAGTTAAGGACATTAGCCCTTAGTCAGATATTTTGACTTAGGTTTTAATTTTTTTCCACACAGAAGTTTTAAGCTCTGTGGCAAATTTATCAGTCTTATATCACTACAGGGTTATAAATATTAGTTATCACTTCGGGTTTGTGTCTTGCTTAGAAAGCCTCATTTGAAGATTGTAAATGTTAGTAAGTTTCCCCATATTTTCCTCTAGGACTTCCATGGTTTAATTTGTTTTGTTTAAACTAGGAATTGGCATTCACATCCTCTTTTGTCCCAGGTCTCAGAGGTCCCTTGTATCTTATAGAGCAGTATTGTTTTATGTTATTTTCCCATGTATAATTTAAAAACAAAATACGTTGTTCAAAACAAAATACAGTGGCAGCAGATAATGGCAGTATCTCTGTAACTGCTGGTAAACTGTATTTCATAGTGAAGTGTTCATAAACTAAAGAGTCATTGATTTGGTTTCCTGGCTAATTAAAATCTGAATTCCATTTGAAGTTCCATTGAAATCATGGTTTTACTCTATAGCAGTGGATGTTTTTTCCCAACCTTTCTGATATTTTTTTCCTTCCTGAGACAGGGTCTTGCTCTGTCACCTGGGATGGAGTGTAGTTGCACCATCAAGGCTTACTGCAGTCTCAACTCTCTGAGCTCAAGTGATCCTGCCACCTCAGCCTCTTGAGTAGCAAGGATTACAGGCACCTACCACTATGCCTGGCTAATTTTTATATTTTTTGTAGAGATGGATTCTCACTATGTTGCCCGGGCTCATCTTGAACTCGAGCTCAAGCAATCTGTCCATCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACTGCACCTGGCCCCTTTCTGATTATTTTAATCTATCTTTAAATGTTCAAAGTGATTTGCCTAATTCATTTAAAGCATATTTAGTTTTTTTTAAATTGAGTGTATTTTATCTAGATATTTTTAAAAGGCAGCATCTAACCTTGGATTTTATAAATACATCTAAATTTGTTATTTCCAGAATGCTTCAAAACAGATCTCTGTAGCCTCGTGCTTTGTTATTGTTAGGTTTTTTTTTTTTGTTTTGAGACAGGGTCTTGCTCTATCTGGAGTGCAGTGGCACAGTCATAGCTCACTGTACCCTCAAACTCCTAAACTCAAGTAATCCTCCCATCTCAGCCTCCTGAGTAGTTGGGACCACAGTCATGCACCAGCATGCCTGGCTAATTTTTTAAATTTTGTTCTTAATAGAGACAGAGTCTTGCTGTGTTGTTCAGGCTGGTCTCAAACTCCTGGGCTCAAGCGATCCTCCCACCTCAGCCTCCTAAAGTGCTGAGATTACGGATGTGAATCATTACACCCAGCCTATTAATGGTTTTGTATAGCAAGTCTTTTGTGGGTGGTGGAAAGATGAAGTGCTGTGAAATATTGTAGGAGCAGAAACTTGAAATGTGGCAAAAACCACATGGGCAAAATTTCTGTCTCTTTTCTTATTTTTGCTTTTTTGTTTAAAG
Seq C2 exon
GTTTTTCTATTGGGAAAGCTACTGATCGGATGGATGCTTTCAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144029:ENST00000272418:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033315=Ribosomal_S5=FE(44.1=100)
A:
NA
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development