GgaINT0089879 @ galGal4
Intron Retention
Gene
ENSGALG00000013795 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr3:52037843-52043212:+
Coord C1 exon
chr3:52037843-52037997
Coord A exon
chr3:52037998-52043036
Coord C2 exon
chr3:52043037-52043212
Length
5039 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TACTCATTCTCTTTCAACAGGTA
3' ss Score
10.86
Exon sequences
Seq C1 exon
ATGAAACATGAGCCATTCTTCTTGTTTGGCAGCAAGCTTGAAAAGAAAGTAGTGGGGAATATTATAAAAGAAAGAGTAAAAGGAGACATTCATGGAGATAAAGACATTACATCCAAACAAACCGAGCCGATACGAATTAAAATCTTTGAAGGAGG
Seq A exon
GTAAGAAAATGCAACTGGAAATTTCAAAGCTCAGCCTGTTGTTTTAAATAGATTTGAAAATGAATGTGAATGAACTGGGATGTAAATAGTCTCCTGTATTTCAGCCATGTGTTGTAGCACCCAAGCTTGTTCTTGTTTTATGTATATGTCAGTGTTAAACTACAGGACATCTATATACTTTTAGTTTTACTATGCTATAGAACAATTATAGTTTTTACATCCTTGTGAGAATGCTCATTCTGTATTGTCATCTTTGTTCTTTAGATCATAATTAAAGAAAGACACAGTTAAGATTTTGTTATTTTCTTCACAATTATTTAATAGCTTCCATAAGGACATCTTTCCATTTTGTGATTTTGTGTGCCTCTGCTTATGTGAATGGGCTAGCTTGGAAAGTTTACTCCTATTCTTGTAATATTACATTTACTGAAGTTGGATTTGATGATAAAATGTGAGATAGCAATGAAATCTGTTTTCTCAGCCTAATCCATATATCTATCATCTAAGGTTGATAAAATGATGAATTTTACTATGGCTATCTATTACTCCTTTGATAATAGAAACAACTAACAGAGCGAGGGAAAAAGGAGAACTGAAAGATCATTAGCAATATTTTGAGGCTTATGGAGCCTGATACAAAAAACAAATTAAATGGACAGTTGCTTACCTCTCTGTAAGAGTATATTCTAAAATGTAAGATGCTGCATTATTTCTTTTAAAAATTCTGACATAGTGCAATTATTTGCCAGAGGTTAGTAGTAAGTAGTCAAGTGGCTGAACAAAATAGTTATTTTTCAGTCTTACCAAACCAAACAGTCTCATATCAATGTGTTACTGGGATAACTAAGTAGGTAGTGATGGAGACATGATGGATTTGCACATGCTATTCCTTCTCTTGTATTTCTGTACTCTAAAGGTTGTCCATCATTACTGTCATGTAGCTTGACTCCCCTTGGACAATGCCCATGAAATGAACATTGACATTTCTTTCTGGTCTGCAACAGTGAAAGGGTATAGCCTGCATCTTACTTGGAAGACTGAAAATGTTATTTTGGACATTATAGTTGGTATGCTGGCCCAGACACAGAACCTGGATGTTCTCTGTGGCTGTACATTGTTCTAGTACCCAAGTCAGTATGTTGGCTACATCAGAGTGATCCAAATTCAGGGATGAGCCTAAGTTTTTAAGAAATTTAAAAGGCTATTACTTGAATTCACACCCACTTTGAAGTATAAAATTTGCCTGCTTCCCACTCTGTATCATTTCTGAATTTGGATCACTCAGCTGAAGATAGTTTGCGCTGATGTAAGCTACATGATGAGAGGTCGGAAGGATAAAAGTGTGTTAAGAAAAGCAACTTGTAGGGGATTCAGATCAGTGTGAGCTGCAACAGATCACTCTATAAAACTCCTCTACAGTCTAACACCTTCTTTATGAAAACTTTGTGTGTTATTCACACCATCTTAAGTTTCCCTGTACACCAGTAAGGTCTGTGAAACTATTTATGTAAAGACATATATTTCATGTGTCAGTTAGGTATATCTCCTAGTAATACTTGGCTATGTTTACTCTCCTTTCTTGGAATAGAACAAAAAGAAAGAAACCTTGATGTCCACATTAATTTCTGGAATTGGGAGGGGACAAACAATTGGTGCAGTATTCTTCTCTAATAGAAGCATATGGCCTTCATATGTAGCTTTCTGCAGTGAATGAGGTGATACAGTCCACACTTCCCTTAGATGAACATTTTAATGTACATTTTACTGGAATTGTTTGTGGAAGGGGATTTATTCTTTTCATTATTTTCTTTTTGTTAATTTAAATGGATCTAATATTCTTTACATGTAATAACCCTGACGTTTATTGTTTTCTGTCCTGACTAATCAGTTTGTCCTCTTCTTCTGGTTTTTGTTTATGACTTCTGAAAGCTACCTCTTTAAGATGAGTAGCTTATCGTGCTTGCTTGCTCTTGGCTGTTTATAGAGCTGTTCTCTTCTACTCTGTTCTCTTCTTCTTTCATGAAGCTCATATTTGCATCACCTGAGCACACAAGTAGTGCACTGAACTATGCAGAAGATGCCCGTTGTGTTTGTTTTATCTTCTCTCCCCTAGACAGATAAGCACACGTGGCAATATCTTGTTTCAGCAGGCTATTTTCATTCATTTTTCATTTGTCCTGAGGAGTGCATTTGCTTAGGGCTCTTGATTATTTTTGTACTGTAAATGCAGAGAAAGCAGTTCAGAATTCACAGCTGAGGAAGATCTGCAGTCATCACAGTTTTCAGTTTCTGGGAAAGTCTGTCTGTTATACAGGAAAGTGTGGTCATGCAGCTGCTCTGTGCCAGGGTAGCAGAATGCTTGTATGGCAAGCAGACTAAAAGTGAGTTATATAGAGCTGGGAATCAGTGAGAACCTGAAGCAACAGAATGAATGGAGTTCAGCAGAAAAGCAGATGTCACAGCACATCACTTACCACACTAAAGCCAGTCAAGAGCAGTTTGTAAGCAGTGCAGCAGACGGGGTTTTGAGGTAGGAACCTACCAACAGTGTTATCACCTCTGGCAGGTGGCTTGATTCAAATGAAATGATTTGATTCACAAAATCTGCTTTCCATCAGCTATGACTGCAGAACCCTGGTGGGATATGAAAGAAAGTCAGCAATTTTAGGTTCAGTACTTGCTACAGTACTGTTAGTTACTTATGGTGTGAAGCTGAAAGAAAGAAGGGATAGAGCATATGTTCCCACTCATCTGACATCTTGCTTAATTATGTTATCAGTTTACAGCAATAGTGCACACTTTGCTTATGTTTGCTCTTTTATATCTATTAGTAATAGACATAGATCATTGAAAATCCCCAATAAAATAGCATTTTGGTTAGATATTTCAGGACTCCAAGGCTTATGAATACTTTTAACTCTAGCACCTCATTAAAATCAAACTCAGAGCACCAGTGACGGTAGTCACTTGAAAGTTATGTAGTGGGAAAGGGGAAATTGCTGAAAGATTTGAGGGAAGCACAAGTTAATAGTAAGATCTAATATTTCTGGGTGCTAGGAAAGGTATTTACCATAGATTCAAACTTCTTGTGATTCAGCATTTGGACCAGGCCATATTTACATGTCCAATTTATGTGTGTCACTTTTGTTACAGTTGTTCTGACGGGGCATACTTAGAGAGTCAAGATTAATTGTGGTCAAGAGCTGTGCGTATGAACGACAAAGAGATGGCTCTTGTCTAATTGACTTTGTGCCCAGTGGGATCTGAGAGGTGACAGAAGCTGGTGGAGTGAGGTCAGGCAGAAGAGCAGGAGAGATGGAGCAACAGAAAAGCAGATGTAATTCAGCATTTTTCTTAGCAGTATCAATCAGGGATGATTTAGTAGACTCCATCCCAGCAAAATTAGACTGCAAGGGATGATGAAAAGCAGATAAGATGGCAGTCTTTCAAACAATATTGGACATTTGTTCTGTCTGTGGGAGAAGGCCTGAAGGTAGCTGATGAAGTAATGGATAGAGAGATGGCTAGGAGTTGTTAGCATGTAAAAACAAAGGAGAACCTGGGAATTGAGATGGACAGAAAAGAAGCATCTCAGAAATGCTGTACATCCGAAACTGCTGGAAAGATCATTGAACTATGCAAATTTTGCATGTGGCACTATGGACAATGATGGAAAAGGGAGAAAGCCAACTTTATTAGAAAGGGGATGAAAAAAATTAATTTAAGCATCCATATTTGAAAGAGGAGTTGATGTTTTCTGTAGATGGCACAATGGACATGAGAACAAGACAGTGTTTTATGCATTTTTAAGATAGCTTCAGTATATATATTGCCAGTGCTACTGTTGAACACACAGAAGCGTTCATCTAAGAAAAGCAGACTTGAAAAATGTTTCAGTGTAACCCTCCAAATTGCCGCTTGCTTCTTGTAGAGTTATCATCACATTAGCAGAACCTTTCACACAATCCTTTATTTATCTAAAGTGCTGACTGTCAGTACCAGTGATAGTTTGTGGGTTTTGCATCCACGGAGTGACTGAAAGTACTTTGTGATGCTTAGGGAGAGGACAGTGGAGGAAAAAGGAATAAAAAAATATTATTTCTCAGTTCTTGCAATTTCTGAATTTTACTTCACTGTAACAAAGGTGAAGTTCTCATTCTAGGGAATGCCCAGTAACTTCAAGCCTCAAAACAGCTGGGCCAGATTCCTTCAACTCTTAGATTTCAGCATTATGAGTTTATCATAATAGTAAATGAAATGTGCAGCTTTATATTGGTTTGCATATCTTAATTCTTATCTAACAGATAAAGTAATCAGCAAAAATAGCACTGAATACTTACGCCTGTGCTAAGAAAAATTCCTTTTATAGAGTTCTGCTAAGGAAGCAGGTTGAAAGTTTCCCATTTTATTTCTAGAGCAGCATGTACCTGCATGAGCTCAACAGTGTTCCTTGGAGTGAGATCCCTCTTTAGGAACTTCAGACATGAGTAGTGTAAATATATACATTCTTGCTAGCCATCTGCATTCCCTTTATGCTTAATAGAAGAAAATGGGCATTTGCAGGATGTGATTTATCTGATCATAAGGGCTAAATCAGATAAATACATTTAAACAAGTCAAACTAATGATGCCACGAAAGGGCTCTGTTTTCAGTGGTGGTAGATGCCCACATGGTTCAAGAGTACAGATAGATGAAATGAATCTAATCTGCAGATTCATAGAAGAGGCTGTGCTTTGTCTACAGGAATGGTCGCTAATCTGTTTCCTAACCAGGTATTTGTAGTATACCCATACCACAGCTCTTTGCTTTCACATTGTTAAAAAAATAACTAAGATACACAAACACAATGAGACCAATGCATTCCCCGTGAAAGGGAAATACTTTGTGAGTTTCAGCTTGAAAATTCAGCAGTTCACATGGACTTCTGTGGCAGTTTTGTGATGAGATATAAAATCAGGATTGGGTGCATAGAGGTAATGTCTGTTCCTGCATGTGATCTAAAATCTATATGATTTAAATACTCATTCTCTTTCAACAG
Seq C2 exon
GTATAAATCAAATGAGGATTATGTATATGTCAGAGGACGTGGCCGAGGAAAGTATATTTGTGAAGAATGTGGAATTCGCTGCAAAAAGCCAAGCATGCTAAAAAAACATATCCGCACTCATACTGACGTCCGGCCTTATGTATGCAAGTTGTGCAATTTTGCCTTCAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013795:ENSGALT00000022399:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]