MmuINT0077942 @ mm10
Intron Retention
Gene
ENSMUSG00000015501 | Hivep2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:MGI Symbol;Acc:MGI:1338076]
Coordinates
chr10:14133740-14139560:+
Coord C1 exon
chr10:14133740-14133894
Coord A exon
chr10:14133895-14139384
Coord C2 exon
chr10:14139385-14139560
Length
5490 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TCTGCCTCTTCTTCAAATAGGTA
3' ss Score
10.77
Exon sequences
Seq C1 exon
ATGAAGCCTGATGCGCCCTTCTTGTTTGGCAACAAACTAGAAAGGAAATTAGCAGGAAATGTCCTAAAGGAAAGAGGGAAAGGAGAGATTCACGGAGATAAAGATCTTGGATCCAAACAAACTGAGCCAATCCGAATTAAGATCTTTGAAGGGGG
Seq A exon
GTAAGGAAACATAAGCCCAGATGTAAAATGTTCAGTTGTAAGTTGGTGTGAACGATCCTGATGGTTGTGTGTGGTAAATAGTGTGTGATCTTGCAGATGCACAAAGGAAATTCTTTTCTCAGTCAAAGTGATGAACGCTGGCTGGAGAAAGCTACCAACTACATACATTTTCTTCTAGGACCTGCCCTCCTCAGTGAGCACGGTCCCATTGTGCATCATAAGTTCCCTCTAAATTTATATGAAATTTTCTACATTGGCAGCCCCATGGTGTCTCATATGTTCCTTTATTCTTTACTACTTCCTCGGCATTTGGGTTACTGCATGGACATACTTGTATTCTGTGTTGATATGAGTGGAACCATGCAGACTTCTGTACATTTCTAAGAAATAGATTCTGTGAACTTCAGTCTTTCATGGGATCTGGACACTTTCATGACTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCTCCAAGTCAAGGTATGGGACTCAAGTAGTAAGGGCCAATAGTTATAAACATGGTACATAAACATATGATATACATATTTGATATGTACACATATCAAATAATATATGCATATAACATATATAGCAAATATATACAATTAAGAAAATATAAGTATATATGATAGCTACGTTTGTTTTTTTTTCCAAAAAAATTTTTATTAGATTTTTTTTCTTTTTTTTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCTCTGCCCTCCCTCTGCCCTGCTCCCCCTAGGTTTTTGTTTCAATAGAAATATATTAGTTGCAATCAATGGAAGAGGTCTAGAGCTATGATTTTAGCTAAAAAAATGTTAACTACATTAAATATATTTGGGGGATTATGTCATTTAGTCCCATCTCACCAACCTATCTCTAAATTACAAAGTTTCATGACCATACTTTTATTCCAATGGCATTTGAAGGACAAAATTTTACTTTTGACCATGAAAAAAGGTTGACTGTTAGTGACAGAATTTCTCACACTTCTACCTACCAATTTGGAGTTGGTTGTTATAGTTGAGTTGCCCTTGGATTTTTTTGCTTCATTTAGGCATTGAGTCTTTTCACCACACTTGCATGTATGCATGAACTTTGTCTCAGGATTTTTTGACATCTGACATATCATTACATAAATGAAAAGAATATAGATTTTGTCTTTCCCAAGAGACCGGTCTCTCAGATCTCTGTGACTCAATCATCATACTTCTATGCAGCAGCTGTCTTCAGAGTAGTGCATATGTACTTACATACATGCACTGGTGTATATGGCTTACAGCAACCATTAGGATTATTGTATGTTTTGAGGAATGCATCTCTGCTAACAAAGAACATAGGTGGAAATAAAAACACTTCTGGGACTCTCTTCTGCTGTGTTTTGATGATCCAGAAAAATCACATGTATTTTTTATTTTCTGTTTTCTAACTCAGGCACATTTTAATCTCTGAACTAATTCTCTAACAATTTCTGGTAGCCAGCATTCATTCCAAACAGCACATTCTCACCTCTGACGTTGTTGGTTGCAAGTGGTAACAACAGTGACAGGGATTACTGACTAGATTGTCCAGGTTATCTAGTTGATAGGGATAATATGCATTTCTTTAAATTGCTGCTTTTCAAAATCCATTGTGTACTGGGTTGATTTGTGGGTCTTCAGAAATGTGGGTATTCATAAATAGGCTAGCTGAACACATTATCCCCATATACAGATTTATGTAGAATTTTACTTTATTTCATTCTTTAGATGAGTTAATCACCTAAGACACTGAAAATACTTTTTTTGTTTGAGGAGAAAATGTGCTTCTCATCAACTAAGTGTCTCAGCGTTTCTTCTGCTTTGAGGGAAAACATCGTGACCAAAAAGCCATTTGGGGAGGAACGCATTCATTATACCTCCAGATCATAGTCCATCATTGGAGTAAGTCGGGCCCGGAACTCAGGCAGGCCTGGAACCTGGAGACAGTAGCTGAGGCAGAGGCCACGGAGGGGTGCTCCTTACTGTCTTACTCCTCATGGCTTGTTCTGCTTACCTTCTTACAAAACCCAGGACCAACATCCCAGGGATGGCACCACCCACAATAGGCTGGGCTTTCTTTCCCACAATTCATAAGTAACTGAGAAATGCCTTGTAGCTGGATCTCATGGAGGCATTTCCTCCACTGAGAGTCCTTCCTCGCTCACAACTCTAGCTTGTGTTAAGTTGACAGACACAACCAGCCAGAACAACTGACCTCATGTCAACTTGACACACAGTCACTATTAAGCCACCACCCTTCCTTTCTTATTCATCCCCAAGATCTCACATTTAAAAACATAAGTTTAAAAGTCCTACAGTCTTTACAAACAAGCTCAAACACATTAAAATTACAGTCCCTTTAAAACAGCCAATGTCCTTTTAAAATTTAAAGTCTTTTAAAATTCAAAGTCTCTCAACTGTGGGCTACAGTAAAATACTTTCTTACTTCAAGAGGGAAAATCAGGGCACAGGCATAATAAAATCAAGACAAACCCAAATTCCAATCAGCCAGTGTCTGGGATCCACTCACAATCTTCTAGGTTGCTCCAAAGGGCTTGGGTCCCTTGCTGCAACTGGCCTGCACTGTAGACGTTATGTCCTGGTTCTTCCTCTCAGGCCCATGTTCCCAGAAATAAGACACAGACTCAAAATATATTTACAAATACTGTGGACATATAGCTAGGCTCCTCTCTGACTAGAATTATAACTTAAGATAGCCCATTTATTTGAACCTACATTCTGCGGTGTGGCTGGTTACCTTCGATCAGGCATGATGAGTTCTTCTCCTCATGTCTTCCTGGGCCAATCTTACTGTGTCTGGCTCTGTCTCAGAATTCTCTTTCCTTCTAGATGTTCCACCTCCTAATTCCTGCCTAAGCCATAGCCCATCAGTTCTATTGAGTGGTGCCACATGCATACAGACATAAGATATTCTTTCTATACTACACTTTCACCAATGGCTTCTCCTGGCTTCTCACATGGCCTTGGTGGTTCTCCATGACCCTTTCATGGCTTCAAAACCAGTACTACCTTGGTAACTCGTACTCATTACCAAGTTTGGCTGCCAGCACTAGGTACAACCTTGGCCACTTCTGGAGCACTTGTGCTCTCAGGAAACACTACCCAGAAGATTTCATCTCAGTGATACTGGTCTCTCCTTAATCACTGCTAATTTCTTAGCTCAAGCTGACCAGCATCAAGTATCCAAACAAAGCAAAGTTTTGATTTAGTAATTCTAGTATCTTTTAATCACAGCTGCTTTTTCATCCCCAGCTACCAGAACTACAGAACCTTAATTCGAGATAGCAAATGGTTCTAATAGAGTCTTCAAACCCCCTCTGAAATTTCCTAAGCCAGGTCTCCATCCTTTGCCTTGCATCTCCTAAGCTCCTATAGAACATCCCACAGAACTCTTAACATCTAGTGACCCTTCTAACCAAAAATTCCAAAGTCCTTCCACAATTGTCCCCACAACATGGTCAGGTATGTCACAGCAATATTCCACTATGCTTGAACCAACTGGTCTTTGTTAGGATTTATATTGCTGCAACATGACTGGAAAAAAAAAGTTGTGGAGGAAATTGAAATTGGTTATTCATCTTACACTTCAACATTGCTGTTCATTACCAAAGGAAGTCAGGAAAGCAACTCAAACAGAGCTGGAACCCAGAGACTGAAGCCAATGAAGAGGCCATGGAGGGATGCTGCTTACTGGCTTGTTCCTCATGGCTTGTTCAACCTGCTTTCTTATAGAACTCAGAACCTTCTGCCCAGGGATGACCCCACCCACGATGGGCTGGGCTCTCTCTCCCATCTACCAGTTATTAAGAAAATGCCTTATAGCTAAACCTTATGGAGATATTTTCTCAGTTGCAATTCCCTACTTTGACATAACTCTGGCTTGTATCAAGTTAATGCCCAAAACCAGCCAGTACAACTCAGTATTGATAAAGCTAGAGTAACCTTTCCTGAAGAATATTGGCTTTTTGTAAAATCATCATATCCCCTTAAGCAATTTCATCCTTCTTAGGAACAGAGAGTGAAATTGAATGTAGAAGGATGATTTTGCGTCTTGAGGATGTGTTCTGATTTATTATAAAATGCAAACATGAGAAGAAAACAAGTTTTAAGGCCAAGCCATAGTTGGGGTGTTTTATGAAAGGGGAAATGGCATGTAAAATTGATGGTTCTCATCTTCCCCTTTGATTAGTACCGACCAAAATGCCCAACATGCTGAGATGAAGCTTTATCCGTAGCAGAGTTGATATTCCAACACATGGAGGGATGTTTCATCTTGAAAAGCCTTCTACAAATTGGACAATTGAATTTGAATTCGCTTTTGTGTCTGCTTGGGGGTATTAGCTAGAGATGGGCATAGTCAGAAGCCTCTTAGAATGGGAAAAAAACATAAAACAAAACAAAGCTCTAGGTCTAAATACCACTAGGAATTCCACAGTGAACAAAGATTTTTGCATGTTAGCCAACCTTTGGAAGCTATACAAAGAACCTTCAGAAATCCTTTTTTGCCACAATGACATGGGAACTATGTCATATGCCCTGCAGTGATGTAAGGGATTGTACTATTTATTCAGTTGTGCAGTATAGGTCTACTGTGTGATAATCAAAATCTATGTGATTTATCATGTGCTGTCGGTTTCTAAGCAAAATGAGATTACAGAGCAATGGGTTGGTATCTCCTCTTCTATCAAGACTTTCATCTCCAGTTCATGACAGTAGATGGCCTCAGGTACACTTTCAGACCAATCTTTCAGGAAACAAACACTAATTTCATCCCAGAATCTCTAGTTCTCATTATGCAACGCTGCTTTCAAGAAGCCAGTTGAAATTTAAACTTCACATGAGTACAGTTTCATGGTCCTGGGAAGAACAGATCACATCTGTAGACAACAGTTGGGGAGCAGAGCTTAGCCTTGGCTAAGTTGAAATTTCAGAGGCACACATGTACCAGGGTTGTAAAAATAGAGTAGAAACTTGCAAGGAAGATTTCTATTCTCAGTTAGGATTATTTCTGAAAATGTCTCCATACGTATATTATAGATGATGTCATGTTAACAGATTATGCACGAAGCATGGTTATTCTAAAATGTTGGTATGCATTTAGTGATGCTCTTTGACTGGATGCTATACTATGCCCACAAGTGGGAGGTCCAGGTCTGTATCTCTCCGGACTTAGGTTAACCTATTGGGACATTTGTATATTCCATCAGTAAATCTGTTATTCCACATAGAATAAAGTTTTGCATACAGCAATAATTCTGTTACATAGATTGTCTCAAGTGTTTGCTATATAAACTTCCCAGGGTTCGTAGAAGTCAGGGTGAATAATTGGAAAAGACCCTCATAGAAATTGACATCAGGCAATGACTAGCTTTTGGTTTGGTATATCACATGCTAAGAGTATTTAAAATCACAGTGGTCTGCCTCTTCTTCAAATAG
Seq C2 exon
GTACAAATCCAATGAAGATTATGTGTATGTCAGAGGACGTGGACGGGGAAAGTATATTTGTGAAGAGTGTGGAATTCGCTGTAAGAAGCCAAGTATGCTCAAAAAACACATACGCACTCATACTGATGTTCGGCCTTATGTATGCAAGTTATGTAATTTTGCCTTCAAAACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015501:ENSMUST00000015645:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types