HsaINT0076326 @ hg38
Intron Retention
Gene
ENSG00000010818 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr6:142764799-142768536:-
Coord C1 exon
chr6:142768382-142768536
Coord A exon
chr6:142764975-142768381
Coord C2 exon
chr6:142764799-142764974
Length
3407 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
ATTCCCTCTTTTTAAAACAGGTA
3' ss Score
9.25
Exon sequences
Seq C1 exon
ATGAAACCTGATGCGTCCTTTTTATTTGGCAGCAAACTAGAAAGGAAACTAGTGGGAAATATCTTAAAGGAAAGAGGGAAAGGAGATATTCATGGAGATAAAGATATTGGATCCAAACAAACTGAGCCAATCCGAATTAAAATATTTGAAGGAGG
Seq A exon
GTAAGGAAACAAAGTGCAAATGTAAAATGTGCAGTTATAGGTCAGAGTAAATGGTCCAGAATGTCTGCATGGAAAAGGTACTGTCTAATCTGGTTGAAAGCTGAAAGTAAATTCCTTTTCTATTCACAGTTCTGAACTCTGGCTGGTAATAGATCATAAGTTCATGCCCTTGCCTTTGGGATTTGCTTTGCAAGAAAATGTCCCTAATGGATATCATTCAAGCCTCTTCCTTAAATTTTCACCCCTCTAATTTATTATGAAATCTACTAAATTGGTGGACACTTGATGTCATCTAAGTTTGTTCATTCTTTGATCATTTTATAGGTATTTGTTTTATTGACGGACATATTTTTATTGTATGCTTACAAAAATCAGATCATGCACAATCATGTATAATCTTCAGAACTAGTTAATTTGTTTGTTTGTTTTTCTTATTATCTAAACTAGAGGCTTTAATGGGATTTCACCAGTTCCATCAATATCCTTTTCTGTCCCAGGATCCAAGTCAGGGTACCACATTGCACTCAGTTGTCTTGCCTTTTCAGTCTTCTCTGGTGTATGACACTTTCTCTGTATTTAGGAATTTCTTTTCAAATCTTGAGTCCTGAGTCATAGAAACTCAAGTAATAAGGTTCAAAGACTTTGTTATTTGTATAGTTAAGAAAAATTACACATATGTAATGTCTTGTTTTAGATTTTGATAGAAATGTATCTTTCATCCAGTCACATAGAAGGAAAAGCCTACACTTATGCTTCTAAAATTTAAAAATTTTGAAGCGTGCTAACCACATTTTGGAGATTATGATGTAATTAGCCTTATCTCTACAACAAATCTATTATTTACATATCTTCATGGGCATGACTTTATTCCAATTATATTTGGAGGAAATAATGTTACTTGTTTGACTATAAAATGTGGAATGTTCAGTGAGATGAAATATCCATTTCTCACCTAGCATTACCGGTTTGGAGATGGATTATTCTATTTGGTTGTCCCTTAGGTTTTGCCCTCTTTGGATATCTAGCATTTTCACCACTAAAACCACAATTGTATGTAGTCATGAAGCTTGTCTTGATATTTTTTTGACATCCCCCATCTTTTAACACAAACGAGAGAAATATAGATTTTATCTCTCCTCAGAGACTGAGAGGTCCCTGTGACTGAATCAACCCTCTCACATTCAGCAGCCTTCATAGCAGTGTACTTGCACCAATAGATTAGCGAGAACTCCACAATTACTGTATGCTTTGGGGAGCCCATCTCCACTAACGAAGGACACAAGTGAAAAAGCGTATGTGAACATTTTATTGCTGTGTTTTGGTGATCCAAAAGGATTGTGCCCATATTTCATTTCCTCCTCCTTTAATTGCCCCGTTTTATGGGCTGTGTCCCATTACTTCTTAATCTGTGGCCCAATTTCTGCCCAGTGGTGACCAAGTGTTTTTTCCAAACCTTGTGTTACCTCCTCTTATTTTGGCAATTGCAAAGTGATAGCTAAAAAAATAAAAAGTATTACTGACCAAAATTGTAAGTGTATATTGTCTAACTGATAGGTTTAATAATAAATTCAATAATTTAGTTAAACACAGCTTTGAATGTTTTTCAAAATCCATCAATTACCTTATCAAGTAGATTCATGGGCCTGTAGAACTGTTGTATGATATATTATTTATACCAGTTTCTCTAATACATCATTATATTTTATACAGAATTTTACTGTATTTTCATTCTGGAAGCAAGTTAATCAGCTAAGACATTGAAAATAAAATTATACTGCTTGATGATAAAATGCATTTCCCATCACTATGATGGCAGGCTATAGTAAGCTTGAAGTATCCTTCCTTGAAGAAAATTAGCTTTGTACAAAAGTATTTGTTTTAGTCTATATGTCTTAAGCAATTTCATCTAGTTAGGGGCAGAGAATAGTGAAATTTAAAGGTGAAAGACATTTGCATCTTTAGGGTTTTTTCTACTTTATTGCAAAAGACAAAGATAAAATTCAAAATAATTTTGAAGAACAAGTGGAAGTCAAAATTCCTGGTAAAAGGGGGGAAATTTAAAGGAACGGAAGACATGCAAAATTGATTATTCATAGTTTTGAATAGTTTCTACTTAACTCTCATCTGGATTGGTACTGACCAAAAAGTAGATAACGTTAAGATTAGATGTGAATCCGTAACAGAGTTGCTGTTTAAATATGTGGATGGATTTCCTTTCTTAAAATTATTTCAATAGATTGGATGACTGAAGTTAAACTTGCCTTTATTCCTGTTTGTGGATTAGCTAGGATAAAATGAGGAAGTTTGCAATGCTCTTAGAATGTAAAAAAACTGTAAATTTAGTGCCTTTAACTAAATCCACAGTGGATTAGGGCATTTTGCATGTCAGTTTACCTTTGGAAGTTATGAAAAGAACTCCCCAAATGGAGCGTCTTTCCAAAAATAACATTAGACCCAAAATTCTAGCCTAGCTTTGACTTAAGAGATAATGACAGTCATTGAATTAGTCCGTATACTACTACTATATCTTATGACAAATTATGTTTTATTGTATTCTAAAATGGAATGGTTGAGCATTGGGTAGATTTCTTCCCTTGATTATCAAAGAAAATACCTAAGACTGTTTTTCTAGCCGATTTGATTAAGCAAGATGACCTCAGATATCCTTTCAAACATCTCTATGAAACCCTTCTGGAAACAAATGCAAATTTGATTAAAAATAGAATCTCTAGTTTTCATTATGTAACTACCTTGAAGAAGCTAGTTGAAATTTAGACTCCACATTATTACAGATTCATGGTCTTTGGGAAGAGCAGATCAAATCTGTAGACAACAGTTGGTGAGCTGAGCTCACCCTGTGTAAACTAGAAATTTCTGAGGCACTCTCGTGCCAGGATTGTAAAAATAGAGTAGGAACTTGCAATGAAGAATTCTATTATCAGTTATACTTAATTTAGCAAATTTAGAGGGTTGTATGTTTGTACATGTACATCTTAGATGATGTAATGTTAACAAAAGATACATGATGAACATGTTGGTATGCTTTTTGTATGTCCCTTGATTGGAGGCCATACTAGAATCCAGTCCAAAGGTCTGCAGCTCTTTGAGGTTTACATAAGTCATTTTGAACATCTACTTCCCAACTCTATAAATTCACATGTAATAGTGAAGCCAATTCCATTTTGAATTCCATGGAGCATTACATTTTGTTTACAGTGCCAAATCTATTATCTAGTTCTTTCAGCCATTTACTGCATAAATTTCACAGGCTTCGTAGAAGTAAAGTTGAATAATTGTCTGCAAAAGACCCTCATAAAACTTTGCCGTGCAAATAATTAGCTTTTGCTTTAATATATAGCATGCTAAGAATATTTGAAAACACACTGGATTCCCTCTTTTTAAAACAG
Seq C2 exon
GTACAAATCGAATGAAGATTATGTATATGTCAGAGGACGTGGCCGGGGAAAGTACATTTGTGAAGAATGTGGGATTCGCTGTAAGAAGCCAAGCATGCTCAAAAAACACATCCGTACCCATACTGATGTTCGGCCTTATGTATGCAAGTTATGTAACTTTGCCTTCAAAACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010818:ENST00000367603:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development