GgaINT0090254 @ galGal3
Intron Retention
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13228345-13234596:+
Coord C1 exon
chr3:13228345-13228436
Coord A exon
chr3:13228437-13234512
Coord C2 exon
chr3:13234513-13234596
Length
6076 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CCTTCATTTATCTGTTCCAGGTT
3' ss Score
10.84
Exon sequences
Seq C1 exon
CCAAACCATTTACATCTAAAGTGAAACAGATGCGACTACATAAAGAAGATTTTGAAATCCTGAAGGTGATTGGTCGGGGAGCTTTTGGTGAG
Seq A exon
GTATGTACATGAAATAGGCAGGAGGAAGGATTTGAATATGCTCTTGCAGATCTGTGGTGCTGAAGAGAGACAATTGACAGCCCATGTATCATGTACATATGTACAAATTTTACATTATGTGGACGTAATGGATGATATAGGTCAACCTAATAATTGATGCAAGTATATTTAGATTTATATATTCTCTGACAGCTCATTTTTTGAGAGGAGACACATACATGTGGGTTGAAAGACAGTGTTTCAACCATCTGATGATAAACTATTTGCTTGACTATAGTTCTTTCTAGTCAGCAGATCGGCGCTGCTGAGTTACTGACAGTATAAAGATCTAGTCATTTCTAATTATCCTAATGACTAAATTGTCTGAAAGCAGTTTTCAAGAACTTAAACAGATATTGATACTGATATTCTAGGAACGCAGAAATCTCTCTATTGTTGTCACTTTATTTCCTCAATTTGATATTTAAACGTTGTTTTCCTGCATTTCTTCTTACTATTAACTATAAAAAGCTTTTGCTGCCTCTAACTGAAGAATCTCTTGTTTTAAGTTGTCAAATAAGGCTGTCAAACAAACCTCATTACTAGGTTTTAAGGACAATAGGAGTATAAGAATACACAGGCTGAGGAAGCCTGAATGAGTAAATCTTACTTTTCAGCATCTGCTTCTTGATACTAAGTACGTGTGCTTTCTTCTTCACGCAAGGCACTATTTATGTCAAAAGAACAATGTTATATATAACAGTGGCTGATTTTTTTTGTGGTCAAATGTGCTAAAATGGGAATAGTATGTGAAGTCTGTGCAGAACGTATTCCTATTTGCCTCAAAAAAATCTAAGAGCTAAAATCCAAAGTACAAGGAAAAGACTGTGGAAATGTTTTTCAAACCATGACATTCTGAATGGTTTGAGAGCATCTCTGAAGGCTTCAAGGCAGATGAGGAAGTGCTGGTTTAAGCTTTGCTTATCTATTTGCTTAGTGTGAAAACTTAGCTTTGCTAATCTGCGATTATGGAAAATAAAATTTCTATAGTTTTTAAGGAACAGGAATTTTTTTTACTGTAGCGTATATCACTACATACTCTGATTTTACCTCACTAAAATGGGCAGGCATCAAAATGACAACAAAAAGGTAGCATTTACTTCATGTCTTCTGGTTTTTTTGCTTTGTCTGGACTAATGATTCTTTATAAAATCATGTATGTTATCTTTTCATGGATGATAGGTATTTAATCTTAACCTTTGCCACAGAGAAAAATGCTGGATTCACCATTCTGAGACAAACGTTTCTGCATGGAACAGTGACTTTTCTCATTGCTGCCATAGCAGTTGCAGCTTAGTTCATGTATGAATCACGTAAGATGCAAAAAAGATCACTGATATAAGTACTTTCTTGTCAGAAGAACCATGTGTGAAACCTGCCTTGTATCTTGTTTTTGTAAGAAGTCATTTTTGTCTGCTGAATCAGCATCAAACTGCACAGCAGCTAAACCACAAAAAAAATCCTGTAGTGCTTTTTTAAGAAGCTTCTTTGCAGTGAATCATGCCACAAATAGTGAGAGCTTAACTTTCCCCATCTTTTTCTGGAGACTGTGCATAATGTGGTAGTTCTAGGAACAGTAATGCCCTTTGTAATGCCCTACCTGAGAAAGACAGCATGAGTACTAACTGTGAAAATTGTCAGTAAGGAGAAAACTTGAATTCTCTCAATGAAAACATTTGTTCTTACATGTTCTGAAAGTAGGACTTCTTAAATACTTGTATTGATATACTTTAAGTATACTGACTAGCTTAAAAACAAATTTTAAGTCTTAGACATCTGTCTTGGAAAACAAATTCTGTGTGAAATTACAGTAATGTTTAAAGAAATGCAGACAAATTTTACTACTCTTTTAGCCACCATACACTAATATTCAACTGTGAAATACTTTTGTGATGCAGTAGATGATAATAGTTTGCTGAGACAGATTAAGAAATCTGGAAAAAGGTGCTTTCTTTTCAGCCGACTGCAGAGGAGACCAAAGCTACTGCAGGTAGCAAGTCTCAGACTTGCTCTGATTTTACACTACTCAATGGCTTCAATTTTCATACTCAAATATTTCCCTTTTTGTTTATGCAAGTTTGATGGAGACAAGTAGTTTAAAGGTGGCTTACAACTGCAAGAGGTTCCTGGTTTTGTTTTTCCCTTAAGTCCTTAGCCTGCTCGCTGTCATTCCGAGAATGCTTCCTTTTAGTCAAATTAATGATGTCCACTTCACCTCTCCATGTATACATTTGTATACATTCACTTTTTTAACATTTTGAGTAAAAGAGTGCTGCCTTTAGAAAGCACAGATGTCTTCCTGATGTGGACACCAGGTGCTTTCACTGTGCTTGCTTTCAGCATGTGGTTTGACAAATTTTAGTGGACAACCCTAAACAAAAAGACTTTGTGCTTGGAAACTGAAGGAGTCTGCTAGGAAAAGTACAGGAGCACTGCTGATTCCAGTAGGCAACAGTTCTTACTGGTGTCTCTTAGAAGTATAAAAACATGTCTGATTTAAGGTTCTACATAATGTTGAAATTTTCTTTCTGTTGCTGCTTTAAAAAAAAAATGCTACTTGGTTTTGAAAGCAAATATTTATGTAGCTTTTGGTATTTCAAAGATGATGATTTTTGTAGCTCTGAGAACTGATGCAGCCATTCCTGAATTTTGGCATCCAGTTATGAACAGTAACATTCTTCCCCTGCCATCAATCCAGAGGTTTATCATAAGACTAAAACTGTGAGAGAAGCCAAAGGGGTGCTGTGCTCAGATGGTGTTAGTTTCTCAAGAGAGATGAGGCTGTTAGTTCCCTATATGTTCCTTTCAAATTCAGTTTCTGGGGTGCTGTCTATTCTTCATCAACCGGTGCTGGCCTTTTTCCCCCCATTTTTTTTCTTTTCAGTAGTAGCTTCTGGCCTAGCTTCGTTATTATGCATAATTAATATTTTATTTTTAAGATCATTACTTCTTGCAGTAGAAGATATGTGACTGGCAGAATACCAGACAGTGCTGCTGTTTGTGGGAAGTACAGAAAGCTGTTGGAGGAATGAGGAAAAAAAAATGACTAAACCAAAATGTTTACATCAGCACATACCAATAATTTTTGTTGAGCTGCTCACAGGAAAATGTAAATTAAAAAAAGCAAGCAAACAAAATTTCCACCGTGGAAAAAAAATATATATGTCAAGTGTCCAATTTTAGTAAATTCCAGTAGGAAGGCACTTCAGGATAACTACTGAGGAATGGCTGTTCTTTATTCTGTCTTGACAGCTTCACTGGGGAGGGGAGTACATCAAAACAGCACTCAATCTTTGTGCATTTATACAGAGAGCATATAGTGTGTGTATGTGTAAGCACTGTGGTGTCTGTAATCAGCTTTCAGACTGTTTTGTTACTATCAGAAACTGCATTGGACTGTACTTTGTTAAGTGTCAGTTTATTGTTTCAGAATCAAATCCTGAGATAAGCAGTTTAGAGTTTACTTCCATTAAGCCCCGAGACACCTGCAAAAAGGTGTTGTGATTGCCAAGGAGTCGTGATGTTTTTGATCAGGTCTTGTGTGTGCATAGTGGCTATTGATATGGAGTAACATTAATGACTTTCATGAGCTAAAAGACTGCCTCTGATTGTAAACACAGATGGGAAACATGAACTCTTTATTCTTTAGTCACCACTCAATACTGGTGGACATTCTAGGGTACCAAATCCTCAACTGTGTGAAACCCTGTACTCCATCTGTTAACCAGAGGCAACACTATGACTCCTTTGGTTGTTTCCAAGTGAGTGCTGTATCAGGCACTGCAATTTTAGGCGGTTATGCAATGATCATGTCTAATTTGGAGACTAAGGAATATAGTTTTGGGGGGAAAAACCATAACAAACACACAAAAAGCCTTTCACTGAGCAGACAGTGAAAGAACCCCAAAGTTGTATTAAAGATCCCTGTGTTCTGCCTAATCCTCTGCCTGACTGTCCTATAATGTCAGTGGTGCTGGAGGTAAAACTACTTTCCCTGCAAGCAGCAGCAATGTTGCCAGCTCTTGGACCAGTGTTTTTATTTTTCTCCACAGCAATGGCAGAATCCTCTAAGGCACTTAAAGCATAATTATGTAGTAGCTTCATATTGTAGAAGGGCACCCATGTCATCCAAGGTAAGATAGAATTTAAGTGCTGGCTAGTTGCAGTGTTTCTCTTCCTGCCATTTCTCATTAAAAACCAATACAGATATGGCTTGACGGATTCCTGGCTGGTAAAGTGAAAAAAAGACTGGAGTTTCAAATTTGCATAGCAGTTCATGAATCACCACAGGGGATTCATCTTTTCCTCCAATGGAGAACTACGATGCTCAGTATGGATGTGATTTATGAAATGACATGGGATAGTCTAACAATCTACTTCTGTGTTTCAAATTCAAAAGTACTATGGAGGGATTTCAGGTCTGAACATTAGCCTCAGTTTTTATGCTTGCAGTAGCCTCTAAAGATCTCACTTCATAAGCTAGTTTAAACACGTAGGTAGATCTAGTACCTTTCTCTATTCTCTTTTTTTTTTTTTTCCCTTGCTTCCAGCCCCCAAGGCAGCAGTGTCAGCAGTAGGGCTGGTAATGCATTGCTGTCCATATGGGTAGTGACAGCTGCTTTGTCTATGAATCTGTAGCTAAGCACTAGATACACTTTTAGATATACTTAAGTTAGACATCTGAGTATTGCAATTCTGCAGTGTGTACTTTCGCCCTATGTATGAAGCTGCTGCAGTTGATGACACATTTTGAAGGTGGTGGAAAGACGTTTGTGGGATATCCTTATGTACTTTCTGTTATCACTGTTTTTGCACAGAGTTAGTTTGCTGATTAGGAAAGAAGCAGAAAGAATGTAGAAGTCAATCTTAGTATTTTTTTTTTTTTTTGTCACTGACCTGCAGGGTAAAGATGATGATGTTGGATGATAGCATGCTGGTTTGTAACTAAGTGCGCACAGAAATGAACTTATTTCCTGAAGCCTTAGGGTTTATTTGAAAGGGAGTAGACAGAACGGGGTAGTTGGGGAATGGCTGGTAAATGTATTGCTAGTGGAGCTTTTCTATAATTGGGATGGTATTAGAGTGGGTCAGTCTCACTTTGATCGGCAGCTCTGAATGTGTGTGAAAGATTGATGGCCAGTTGGTTTAAGACACATAGCTTTCCCTGCCCGGGGTATCTTGACAATGAAAACATGTTTATGTACATTTCTTCCCTTACCATTTCCTAAAAATACTTCACCTTAGCTTTTAATATAATTAACCCAAGCTATAAATTTCTTTGAAAAAAGACTAGGTCAGTTGATTTTGTTAATATATTATGACATGTGCCTACGGTGTATAATGCTTAACAGACAAGAAAGAGAAAAACAGAGCTTGTATTTTCTAAATTTTGCTTTTCTGGAAGATGTGAATTTCAGTGTTTCCGTACCACTGACAAGATGTCATAAAAAGGCTCATTGAACTTCAGGTGGAAAAATGTGAAGGGAATACCTTACCATGTCTTCAGAGAAAGTCCAGTGCGTTTTTTGAAATGAGAGTAGAAATTGTAGCAGGTCTACAGTCATAATTTGCATCAAAAACCTAAAATATATTGTTTCTTGGTTTTATGAACTGACCACTAGATCATTGTCTTTTCTAGGCGGGTCTGTAATTTAAATTACTGTGTAATACTGGAAGCAGGAGTCCAAGAACATAAAGTGTGCAGTCCTTGGTAACTTCATGCAGATGATAGAGCAAAAAATGTGGTAATAAGAAATAGTATTGTTCGTCTACGATGACTTGGAAAGAATGATGTTCAATGGAAGTGTGATACATAATGAAAGCTTGAAATAGACTTGGATCTTTTCCAGAATAAATATCCTGTACTGCTGTGATGTTACTCTTTCTGGATAGTGATAGTAGGGTACTGTGCATGGATAATAAAGTTAAGTGTAAGAAACACTGAAGGAAAAAACAATCACACAACATCCTCAAGATTTCCTGCAATGAAAAACAATGTCTGTAATGTTTTAGCTTATCCTTCATTTATCTGTTCCAG
Seq C2 exon
GTTGCAGTAGTAAAACTGAAGAATGCAGATAAGGTTTTTGCCATGAAGATACTTAATAAGTGGGAGATGCTGAAGAGAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158:ENSGALT00000014921:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(4.9=41.9)
A:
NA
C2:
PF0006920=Pkinase=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]