GgaINT0091338 @ galGal3
Intron Retention
Gene
ENSGALG00000006112 | F1NDB7_CHICK
Description
NA
Coordinates
chr2:5437743-5440784:+
Coord C1 exon
chr2:5437743-5437925
Coord A exon
chr2:5437926-5440382
Coord C2 exon
chr2:5440383-5440784
Length
2457 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TCCTTTCTGGGGGTTTCTAGACT
3' ss Score
6.44
Exon sequences
Seq C1 exon
GCACTAGCTGCTAAAGGGATTGACTCAATGTCACTTAGCTCCCTGGAAATGTCACCTTTAGCATCCAAGAATGCCAAGGAAAGAAGAAACAGGAGAAAGAAAAAGAAATCTTTGGGAGCAGAAGAATATGGGGAAGACCAGAGGAATTCCAAGTGTGAATATGATGACAGTCAGAGGAGAATG
Seq A exon
GTAAGCCGTGGTCTGAAACATCACTTCTTTCTCACTGCACTTGCTGGGTAGGCCAAGCTCTGAATATGCAATTAAAGCTGAAACTTCCTGCTGGAGAGAAGAATCAATATTTAATGTGACGACTGACCTGGAGATAGCGTGTGTTAGAACTGTGGAAGGAAACATATTAGTACTTTCTTTTCAAAATGAATTAAAAATGCTCACTAAGCATTCTTGGGAACCTGTGAACCTATTTTGTCTCTCTCTCTCTCTCTTTTTTTTTTTTTAATTATTATTATTATTATTATTATTTTTGCTTCAGGATCCCCTCACAGCCTGATTTATTTTCTTACTCTAATTTCATTCATCTGATTATATCTGTCCACTCCCTATTAGAGTCAAAATACTCATAGGAGAAACCTGCGAAGCTTAAAAAGAAAAGAGAGGAGCAGAAAAGGAGGAAATGTGCCTCTGAGGGCATTTTTAATGATATATAAAGATGATATTAGCATTTTTCTATTCCTTTGCTAGTTGCCTCCAAGTCAAAACTTTGTGGCACTTGTTTCTACTGTACGTAACAGGAACAAAAATAGAGTGAGACTGTTGTTAAATAGGGTTTTATATATAAACGATACTGACATGCATGAATATGAATCTGCACATGCTGTGTGTATCAAATGATGGTAAATAGCTTCAGATAATTTGTTTCTGCTTAACTAAGGGCAAAGTTTAAATCAGTGCTTTTTATTTTTGTTTGTTTGTTTTCTGAATAGCCATGTAATGGGCTAAGTCTTTTCCTATTTTGTTGTCAGTGAATTTAGGGGTACTTGGCAGCCATAAAAAGCTGATAGAAAACAAGTAAATGATTTAAGTAAATGTGACCAATTATGGACTCCGAAGCTTATAAGATTTATGCAGAGCTGTATTTCTGTAAATAATATACTACTACTTATCTTAATAGTTTTTGTTTTCGCCTCATTGGTTGAGTGGGTTGTGTTACAAGTTATACCTTTGTTAAAGCCAGAGCTGCTCTCTAGCTTCATTCTGGATGGATTTCAAGACTTCACATACCAGAATGATCATGGTTTGGAGCTGTATATTGCCAGTATGTTCCTTAAATTAATATTTCCTGTTTTCACTTTTTGCCCCTGGATGTCATATGTATGAGAAACATGGGAGACACATTTCAAAGCTTATAGTAAATCTTCTCTGCAAGGCAGTGTCTGGCATGGTTGGAGGGAGTAAGGCTGAGTCATCATTCAGATGCAATCTGAGCAGCTGGAAGTGTGTTGCCATCAGAAATCAGTCTCAATGACTGTGTCATGGAAACCCAGGCATGGAGTATTATTATATATATATATTTTTACCAGTTAAAGTTTGGTAGCAATCCAAATAGGTTGTTTTTAGTTAGAAGGAGCCTTGTTTTTGTGTGCTTCCTTGTGCCAGTGTCACAGAATAGCATCATTACATAATCCGGTGGGGTGAGCTCCAGTGCAAAAAGAAATAATGCTCATTTGGCCTCGCTGGTTTGTGGAGATCTGACCTCTCTTCATATATACTTGGCTCATGAGAAAGTTCTGAAGAAGCTGAAAATTCTGTGTGGGCCGTAAAATCAAAAGTATGTTCTGCCTAAATGCTCTTACCATTAATTTCCTCTTCATGGTATGAGGGAAGGGGACAGACTTGAACTCCTTATGCATTTTCTGAACATCCTTTTCACTCTGTCAGGGTTTACATGCGTTTAGTGCTTGGCTACGTCTTACTGGTGTTCTGTCAGAGTTGCATTCTCACCAGCAGACGTCAGAGTGGATCATCAAGGCTGACATTTAGGTGTAAAGGAGATTGCTGTATACTGAGGTTGCCTACCCCTCAAAGCAGCTATGTGTGTTGGGGTAATCATTCTACAAACCAATAAATCATATTCCTCTTCTTGCTCTTCTTTTTTTTTTTTTTCTTTATCACCTTCTTCCGTCGTATTCTGCTTCTTCTTCTTCCCTCTTCTTCTCATTTTTTCCCACAGTTCATTTCCTGCCCTATTTCTTTATCTCTTGTTCTCCCACTGCAACGTTCCTTCCCCAGCTGTTATGAAGATGTGTGATAAATGCGGTTAACTGGAGCTGGATCCCCTTCCCTGCTCCTGTCTTCCACTCCTTGTGCTGCCTTCCCAGATCCTTTGGCACTGATCATATGGGGAGGGAGTAGAAGCAAAGGAAGCATCACGCTACCAGGCAAATGCCGCCTTGACCCTTCCTATTTCAGTACATCTTTAACTGTTGAGTATTAGACAAATACTTAATGGCTAGGACTGATTTTCCAACCTCTTAACTTTGCAAAGGCTGACTACATGTAATTAAATCTTTCTCTGAATCGCTTGATTTAAAATGGAACTTATTATTCTCCCCAGACCTTCCTCGCTCCTCAAAACATGTTGCAAAATGTTGTTTCTCTTTCCCCTTTTTCCTTTCTGGGGGTTTCTAG
Seq C2 exon
ACTCTCCTTGGCATTAGTTATGGTCCCAGTGCAAACTTGGTGAAGCGCAGAACCAGCCACGGAAGCATATTCAGTTTCCGACTCCGTGGTAGAGACACTGGCTCCGAAACAGATTTTGCCGATGATGAGATCAGCACCGCTGGGGAAAATGAAAGCCACCGGGGCTCTCTCTTAATTCCAAGATCTGGGAGACGTCCGAGCATTCAAAGTCAAGTGAGCCATAGTTCTCACCCTACTACTCCCAACTACACCCAGACGGGCAAAAGGAACAGCTCAGTGGATTGCAATGGTGTGGTTTCCCTGATAGGAGGAGGCACCGGGGCACTCAACCCAGACCCTACTTCTCCTGCAGGGTTACTGCTCCCCCCATTTATTATGGAAAAACCTGGGACAGGCGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112:ENSGALT00000009918:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.607 A=NA C2=0.701
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PU(21.0=75.4)
A:
NA
C2:
PF119333=DUF3451=FE(60.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]