GgaINT0091338 @ galGal4
Intron Retention
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5502291-5514589:+
Coord C1 exon
chr2:5502291-5502473
Coord A exon
chr2:5502474-5514456
Coord C2 exon
chr2:5514457-5514589
Length
11983 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TGGTGTGTTCATTTCAACAGACC
3' ss Score
8.85
Exon sequences
Seq C1 exon
GCACTAGCTGCTAAAGGGATTGACTCAATGTCACTTAGCTCCCTGGAAATGTCACCTTTAGCATCCAAGAATGCCAAGGAAAGAAGAAACAGGAGAAAGAAAAAGAAATCTTTGGGAGCAGAAGAATATGGGGAAGACCAGAGGAATTCCAAGTGTGAATATGATGACAGTCAGAGGAGAATG
Seq A exon
GTAAGCCGTGGTCTGAAACATCACTTCTTTCTCACTGCACTTGCTGGGTAGGCCAAGCTCTGAATATGCAATTAAAGCTGAAACTTCCTGCTGGAGAGAAGAATCAATATTTAATGTGACGACTGACCTGGAGATAGCGTGTGTTAGAACTGTGGAAGGAAACATATTAGTACTTTCTTTTCAAAATGAATTAAAAATGCTCACTAAGCATTCTTGGGAACCTGTGAACCTATTTTGTCTCTCTCTCTCTCTCTTTTTTTTTTTTTAATTATTATTATTATTATTATTATTTTTGCTTCAGGATCCCCTCACAGCCTGATTTATTTTCTTACTCTAATTTCATTCATCTGATTATATCTGTCCACTCCCTATTAGAGTCAAAATACTCATAGGAGAAACCTGCGAAGCTTAAAAAGAAAAGAGAGGAGCAGAAAAGGAGGAAATGTGCCTCTGAGGGCATTTTTAATGATATATAAAGATGATATTAGCATTTTTCTATTCCTTTGCTAGTTGCCTCCAAGTCAAAACTTTGTGGCACTTGTTTCTACTGTACGTAACAGGAACAAAAATAGAGTGAGACTGTTGTTAAATAGGGTTTTATATATAAACGATACTGACATGCATGAATATGAATCTGCACATGCTGTGTGTATCAAATGATGGTAAATAGCTTCAGATAATTTGTTTCTGCTTAACTAAGGGCAAAGTTTAAATCAGTGCTTTTTATTTTTGTTTGTTTGTTTTCTGAATAGCCATGTAATGGGCTAAGTCTTTTCCTATTTTGTTGTCAGTGAATTTAGGGGTACTTGGCAGCCATAAAAAGCTGATAGAAAACAAGTAAATGATTTAAGTAAATGTGACCAATTATGGACTCCGAAGCTTATAAGATTTATGCAGAGCTGTATTTCTGTAAATAATATACTACTACTTATCTTAATAGTTTTTGTTTTCGCCTCATTGGTTGAGTGGGTTGTGTTACAAGTTATACCTTTGTTAAAGCCAGAGCTGCTCTCTAGCTTCATTCTGGATGGATTTCAAGACTTCACATACCAGAATGATCATGGTTTGGAGCTGTATATTGCCAGTATGTTCCTTAAATTAATATTTCCTGTTTTCACTTTTTGCCCCTGGATGTCATATGTATGAGAAACATGGGAGACACATTTCAAAGCTTATAGTAAATCTTCTCTGCAAGGCAGTGTCTGGCATGGTTGGAGGGAGTAAGGCTGAGTCATCATTCAGATGCAATCTGAGCAGCTGGAAGTGTGTTGCCATCAGAAATCAGTCTCAATGACTGTGTCATGGAAACCCAGGCATGGAGTATTATTATATATATATATTTTTACCAGTTAAAGTTTGGTAGCAATCCAAATAGGTTGTTTTTAGTTAGAAGGAGCCTTGTTTTTGTGTGCTTCCTTGTGCCAGTGTCACAGAATAGCATCATTACATAATCCGGTGGGGTGAGCTCCAGTGCAAAAAGAAATAATGCTCATTTGGCCTCGCTGGTTTGTGGAGATCTGACCTCTCTTCATATATACTTGGCTCATGAGAAAGTTCTGAAGAAGCTGAAAATTCTGTGTGGGCCGTAAAATCAAAAGTATGTTCTGCCTAAATGCTCTTACCATTAATTTCCTCTTCATGGTATGAGGGAAGGGGACAGACTTGAACTCCTTATGCATTTTCTGAACATCCTTTTCACTCTGTCAGGGTTTACATGCGTTTAGTGCTTGGCTACGTCTTACTGGTGTTCTGTCAGAGTTGCATTCTCACCAGCAGACGTCAGAGTGGATCATCAAGGCTGACATTTAGGTGTAAAGGAGATTGCTGTATACTGAGGTTGCCTACCCCTCAAAGCAGCTATGTGTGTTGGGGTAATCATTCTACAAACCAATAAATCATATTCCTCTTCTTGCTCTTCTTTTTTTTTTTTTTCTTTATCACCTTCTTCCGTCGTATTCTGCTTCTTCTTCTTCCCTCTTCTTCTCATTTTTTCCCACAGTTCATTTCCTGCCCTATTTCTTTATCTCTTGTTCTCCCACTGCAACGTTCCTTCCCCAGCTGTTATGAAGATGTGTGATAAATGCGGTTAACTGGAGCTGGATCCCCTTCCCTGCTCCTGTCTTCCACTCCTTGTGCTGCCTTCCCAGATCCTTTGGCACTGATCATATGGGGAGGGAGTAGAAGCAAAGGAAGCATCACGCTACCAGGCAAATGCCGCCTTGACCCTTCCTATTTCAGTACATCTTTAACTGTTGAGTATTAGACAAATACTTAATGGCTAGGACTGATTTTCCAACCTCTTAACTTTGCAAAGGCTGACTACATGTAATTAAATCTTTCTCTGAATCGCTTGATTTAAAATGGAACTTATTATTCTCCCCAGACCTTCCTCGCTCCTCAAAACATGTTGCAAAATGTTGTTTCTCTTTCCCCTTTTTCCTTTCTGGGGGTTTCTAGACTCTCCTTGGCATTAGTTATGGTCCCAGTGCAAACTTGGTGAAGCGCAGAACCAGCCACGGAAGCATATTCAGTTTCCGACTCCGTGGTAGAGACACTGGCTCCGAAACAGATTTTGCCGATGATGAGATCAGCACCGCTGGGGAAAATGAAAGCCACCGGGGCTCTCTCTTAATTCCAAGATCTGGGAGACGTCCGAGCATTCAAAGTCAAGTGAGCCATAGTTCTCACCCTACTACTCCCAACTACACCCAGACGGGCAAAAGGAACAGCTCAGTGGATTGCAATGGTGTGGTTTCCCTGATAGGAGGAGGCACCGGGGCACTCAACCCAGACCCTACTTCTCCTGCAGGGTTACTGCTCCCCCCATTTATTATGGAAAAACCTGGGACAGGCGATCTGGTGAGTACTTTATAACTTTTGTATGTGATTCATGCTCTCATTTCCTTCTGAATGTTGTTGGAGTTTGCTGTAATTTATTTACATAGTATGCAGTCTGCAGCGAGAAACTTCCCACCATCCTAGGCAGGATGGGAAGACAACAGGCTGACTCACATAGTGACATGTGTCTGGTGCCACATAAGTTCACAACTTCGGCTGAGACTTGCCCTTCAGAGCTGACTGGAAGAAACAGGAGTTGGACTCGGTGGTCCTTATGGGTCCCTTCCAACTCAGGATATTCTGTGATGCTGTGAAAGGACTAAATACTGGGATTCATACACGTTTTCTTTTCTTGTAGGGGTATTTTTCAAGTTGGTTCCTTTGCCACTTGAATATCTGCCATTGTGTGTTGGAGAAAAATAATGCTTTTAAAATGATTCTGTATTCAGCGTTATCATCTTGAGACTGCGTTTTCTCACTCTGTTTTTTATCTGTACACATCTAACTTCTGCTCTTCTCTATAGCTGCTTGTGGGGGGCTGTTCTTACTGTCCACAAGTAGTTCCCAGAAAGTTCTAGCATCCAGTTAGGACAGATGAGCAGATGATCAGAAGATTTCCAGGATCTTTGTTGCAAAGCACCGTTATTGCAAAATATTTCTTAAGGCTGGAAGTAAAACTATTAAGACTGATACTGTTAAGACATAAGATATGAATTCACTTGGAAATGTATGGGATGCTGTTTTGAAAATAGCTTCTTCATAGGCAGAGCAATGATGACCGGTTGTCATATGTCAGATACGGTGGGAATTCATCTCTTCTAATGTAGATATCTACATTGGAGCTCATCTCTCTCAATGATCTTTAAAGCAATGAAAGTCTAGTCACTATGGTGAATGTGGGCAGGATTTATTTCATCTTAGAGATCTAAAATGCATTGGAATAATCTCTGTCCCTAAAAGCATCTATTTCTGTTCTCTGAAAACAATAAGAGCCCGGAGTGAAAAACTCTTTATTGCAAAGGTCTTAACTTAGGTGAGATGAAACCCACCTAGAGTAACCACATATCAAAAATGGATTACGTTGAGAGGGTGAAAAGCAAGTGATGTTCTAATGTGCATTAGTCAAGGTATTTCCTGAAAAGAAAGGCAAATGAGATAGATCCCAGCTGTGGTGTCAGATTATCAGTAAATTGAGATGTAGCTTTCTTTTCGCTGTAGAGAAGGCAGCTTCTTCCCTTTCAAGCGTTGGTCTGAATTTTTTACTCACCTATCTGAGCACTCCTTGTAGCCCTTCAATTAGAGTGTCATGCTATAAATGCAAGAAGGGGCTGTTCTGTGCATGGGAAGCTATGGGAAGCATGGTGGTATGAGAATTATTTGCTTTGTTGACAATTCTGGGGCCATTGCTGCTTCTTCAGATGTTCACACTCATTTAGGACTTCGGTACTCCCTTTTGCACTCTTTGCAAGCAAGAGAGACCAATCCTGAGAGCGGTCTCTAGACTACAGAGCAATAGACAGGCTGAAGATGGTGGGCTTCTATTGAGGTTATGCTTGCAGCATAACAAGCTGCATGTTAAAGAAATTGTGGAAGAAGGAGGTTGTGCATCTTTAAAAAAAAACAATCTGAATTAAAGTAGAAAGGCTGAAGTAGATGAGCAGTGGACGTCCCCTTTTCTCTGTAAGACAAGCAGCTGTGCATCCTGCTGAGGCTCTCGTAGCTGTCAGAAAGCTCAACAAACCATGTGAGCACTCAAGCTTTTACGGCAAAAAATGGTATTTTACAGGATTGGGCCCTGAGGTGACAGGGAGACTTTGAGCTCTTCTGGCATTTCTTTTCGTTTGCCAGCTTCCTGCCTTTTGAAAAGGGATGTTGAAAATGAAATGGGCTTAGTGTGCAAGCTCACTAGGCAGTTCCCTGGTAGTCTAGGAAATAACACCCAGACACTATAGTAACAGATGCTTGGTCAGTGATGCAATGTGAAGGATGTTGTGTCTCCTGCAAAACTGGTTTGGTATCTAATCTAGCCAGAAAATGTGAGCTGGAGTTAAAAGCTAATTGGAAAGAAGCCCACTGCTGTACAAATGCATTTGCTACAGAAACCATGAGAGCTGGGCACATATGTGCAGCTGCAGCTGTGGGGCACAGGCAGAAGGAAAGAGCAAATCGAAAACCTCGGTATGTTCAGGGATAACACCTCTGGGGCTCTGTGTTGGATTATTTTTGCTATCTTCTTGTTAAACTTTTGAAGTTAAGTTTGTTCCTGCTTAGTAGCTCTGGCTCCTTTTTATTTTCTCTTGGGGGAGGTAGAAGGAAGATGTTACAGGGTGAAGCTGAAGTTAGCTTGTTAACCCTACCAGCCCCACCGCTGTTATTTGTTTCATATCAGTGTAAACCCATGGTGAGACAGGACCCACTTCTGCTATATATGCTCCATCTTCCATGAACAAGAAAACAAAGAACCAGTTCTTTTCATGGAAAGGCATCACTTACGTATTGCGTCCAACCTGCAAGACATTTCTACAATTTTAGCCTGTTCATTCTTAGCATCATTCAGCCTTGAATTTACCCTAGGCAGTGCAGTTGGGACTGGGATGAACAGCTTTTGTGCCTTTATGCCATTGCCCTGTTCCAGCTGAGGGCTGCTTGCCAGTGGGACTTGCTGTGGTGGCAGCTGATGGGACATGACAACATCCACACTGCTCATACCAAATTTTGGGAGAAGTTACCCTGAGAAGTTGTGGCTGCCCCATCCCTGGAGGTGTTCAGGGCCAGGCTGGATGGGACCCTGGGCAACCTGATCTAGTGACTGATGTAGTGATGGGTAGCCCTACCTGGGGCAGGGAGGCTGGAACTAGATGGTCTTTGAGATCCCTTCCAACCCAAGCCATTCTATGATTCTCTGATTCTGTGTAAGTCAAATATGACTTTGAAATGCTCTTCATTTTATGCTGGCCATGGTTATTGGCACGGCTAGTTGTGAGTCTGCTTCCATGAGAAACAAATGTTCTTACATTTTCTGTCTCCTCCATCCCTAAATACACCTACTGAAGCAGGAGGAAATTCATGTAATCTCAGTGGATGGTGCTTAGACCATTCAGTCCAGTTATGAAGGGTAGTTTGAGTGGTCGACAGTCTTTCTGGTCATGGAGGATGTGGTCCATGCAGAATGGCATCCATCCAGTAGAGTTTCTCAGGAGCTGTCCTTGCTGGCACCAAGGGTTGTGCTGCAGTGTTCAAGCTAGAAAGGTCATATGAAGAGTAAAGAAGTCTAATGTAGAAGTATGATCTGCAGACACTCTCCAGAAGCTCTGGGTCAAGCAGTCTGACTGGATATGAAGAGCAAGAGGCGCTCAGGATGGAGGTCTGCAGGGTGCTGGTGGCAGGAAACATGTGCTAAGTCCGAATTATTCTCCTGGAGATCTCCATGATCCTCAGAGCACTGAATCAGGACTGGGCCTGATTTCCCACCAGCTTTCTTCAAATGGTGCAGCTGCTGATTTCAGCAGGCTTAGCCTGGCATAAATAGGCTGAAAGCTGCACCTGGTTTTAAGTCCTATTTTTTTTTTTTTCTCCTTGCTTTGAGACTGATACATTTTGAAAATAATCCATCCTTTACTGCTGATAACAATTGTTGGTCTGGAAGTTTGAACTTTCTTTGTTCTTAGAGAAAGTCTGAGTGTTATTTAAGCAACTTCGGGGCACTGTAAAGGCTAAAGTTTCCATGTGCCTGTCTAGAATTCATTTGTAGTTAAGTATTACTCTGTTGTGCCTTGGTGTGTGCAGAATATAGAATAGCACCTCCCTTCACAAGATACTGATCCATTTGGACAGAATTGGATTAAGTTAATGAGCTGTTATTGGGAGCTCAGTTTATCCATGGGATCTGATGAAGATAAGGAAAGCACCTGTGAATTTTTTGAAGGCTAAAAAATACAGAGGATACCATCCACTCATTAGAAGCAGAGCAGGGCCACCCAAGACATGATTTTGGAATGAACAGTAGTGGGAAGCTTGGGGCTACCTGGGATCTCCCAACCTTTGCTGAATTTCCTCTTCATCACAGTTTTTGTTCTCCTTTAGTAAAATAAAAATCTGGGTATTGATTCTTGATGGGGGGCAAACTGCTTGGTAAGTAAGCCCTGAGTGAAGGCAAGGCTGTTTATTGAGGTGCCAAACTGAGGATTTAGGAGCTTATCTTCAGACTGAATGTTTGTTCTTTTTTTTGTTGTTGTTGTTTTAACACAAAGAGAAGAGACCTTGGCTTTTGTTATTTCTAAGCAGAAAGCTGTTTTGCTGACCACGTGGCTTTAAGGTTTTTTTTTGTTGTTGTTGACCTTAAATTCCCCCCAAGGTAGAATTTATTTATTTATTTATTTTTCCCCTCCTTGCCTTTGCCCCAGGACTGTTGAAAAGGCGAAGTGTTAGCAGTTTTGTGTTCAGAAAAAGGTCAACACAATAAGTCATCCAAACACTGCCACCAAGAAGTCATATGGCTGGAAGCTCGTCTGTTGTCTACTGGGACTGCTGTCATCATGGCTCCAGTTCCTGTTCACTTCAAACTTTACTTTAGCACATCCCAAAATAAGACCACACCTGTGGTAAATTGTTGAGATTTAACATAAATATTGCAAGCTTCTCCAGCTTACTGTGCATCTCTTTAAATAATCAAGTATTCACAAAATTAAATGCCTTTTTTTTTTTTTTTAAGGCTGTGTGCTCTTATGACCACTACCAATCTCATTAAATACATATATTTTTTGTGCCTTTTTGGGTCCATTGTTCATGGTGTGCCCTGTCCACCTCTTTTATGCTTGAAAACATTTTTACTGTACAAGGAAAATTAAAGCTGTCCCAGTTCCCAAATGTGATCTTTAAAATTCTGCCACATATAAGCCCATCTTTGCATAGCGATTTTGACATAGCTCAGAGCAGTGGATGCTCAGAATAAAATAATTCTGCAGTGTTATGCATCCTCATTTACATGTAAATTACTGAATAGCATATTTGTCCCTATAGAATTTAGCTAATCCAAAGGAGAAACATTTCCAGTCAATCAAGGAGCAACACAAATAATCTTGTCTTGACAGAGATGCCTGTATTTAACTCCATTGTGATTTCTCATCTGGACGCTATGGAGACTCCCTGCATAACTCTAGAGACCCTTGTTATTTTGCTTTATTTCCATAGACATATAAGTACCATGACCCTTTATGCCTGTGTTTACTCTCTGTATGATGCTAATAGCTTTTATACTGCTGTGCTTTTCCAGTTCCTGGAACTGCTTTGTACCTCAGACTGCAAAAACTTCCAGTTCCTTGTATGAGGATTAGCTATCTCACTACTAAGATAGGTAATAAAACCTGCTCATGGATCTGTTCTTAACAAAGAACAAGAGCTCATGAACTTCCCCAGGTAACTTCAGTAATTTGGAAGAACTCATCTGCATGGAAACTTTCTTCTCTGGAAAATATACTTCATGATACACTGCAAGCTGATCAAATGTGCCTGTTGTCCCTCGTCCTGTCACTGGGCACCACTGAAAAGAGCCCCATCCACTTGACTCCTGCCCATTTGAAATGTATAAGCATTTTTTTTCTCCAGGTGGAACAGCCCCAGGTCTCTCAGCCTTTCCTCATCAGGGAAGTGCTCCAAGCCTTCATCATCTTTGTGGCCCTACACTGGACTATCTCCAGCAGTTCCTTGTCTTTCTTGAATTGAGGAGCCCACAGCTGGACACAGTACTCCAGATATGACCTCACCACAGGATCACCTCTTGCCCCGCTGGCCACACTCTATGTAATGGACTCCAGGATCCCATTGACCTTTTTGGCCATGGGGGCAAACTGCTGGCTCGTGGCCAACCTGTTGTCCACCAGGAGTCTCAGGACCTTCTCCACAGGGCTTTTCAGCAAGTCAAGCTCTAAACCTGTACTGATGCATGCGGTTATTCCTCCCCGGGTGTAGGACTCTACACTTGCCCTTGTTGAACCTCATCAGGTTCCTCTCCACTCAACTCATCAGGTTCAGCCCGGACTCTTCACATATCCTGGCTTAGCTGAATCCTGCAATAAGAGGAATGAATCTGAATGTTTTCTCTCTAACTCTGTAGTGCTACAGTGAATACTCTTTGCACCTGTGAATAAAGGTGGCTTTCAGATAAAGGCCATCAGCCCATGAATTTTGCAAAAGCAGTTCTGCACGCATCAGTGGGAATATATTATCTTACTTGACAGACAAAAAAAATGAAAACTTCTGGGGATGAGGTTGTATAAAGAAGTGCTATTGATATATGCTAAATTCTGGGTCAGAAGCAATGAGAAGATGGTACAGTTTTAAAAGAGCTAGATGATCCATTGGAATTTGAGAATTTCTTATACTTCCTTCTATAGACAGAGGGAACTGGCAGAAGAGTTGCTTTGCTGTTTGGCATTTTTGCTTTTCTTTGTTTTGACTTTTTAAAGCTTATTCTACCTTCTTTTTCTTTCTTTCTTTCTTTTTTTTTTTCCCCTTTAGTTTATTCTACTTAAAATATGTTCCTCTTGTGGCACTTTTTCTCCTAGTTTTTTTTTTTTTTCAGTCCTACATATGTAGGTTGCTCCAAAAGTAATGCCTCCTACTCCTTATTTCCATGGAAATTACAATCGCTACAAAGAGCACAATAGTACTTTGATAGAGCAAATTTTCAGCTACAAAACACTATATTTAAAGACAGCCACCACCAATAGCCAATTTGTGCAGGTGATCTAGCTGATTGCAACTCTCTTCATTTCATGGTGTGGCAACTGTGCATGGCTGTCTGGAACTTGGCTTGTCTTTTACATTCCTCTTGCCACAGCTGAAACATGCCACCTCACTGTGCTCACATCCACTGTTTGATCTTTATAAACATTCATCAAGCAGCCACCTATCAGTGGGTGCAATTTCTTCCACATGAAGGAATTCAGTGACACACCTTTGCTTCATACACATTTCCATGTCAGGTGCCCTTCTGTCAGGCTACCCCTCTGCTGCCATCTGTTGAATGGTAACAAAATGTAACAGAATATTGGCGAGAAGGTTCAACCTCTACCACCATCCCACCGACATCCGCCTCTGTTGTCATGGGCCAACATCATAAAATAGGAGTCATTATTTTCAGAGCAACCCTCGTACTTCCAATGTTCTCCAAATTGGTGTGAAAGTTCACGCAGTTTGGTAAATGCTCTCTTCATTAAAACATTTGTTGTTTCTTTGTTTATTTTACATTTCTGAGGTGAAGGAAATAAAGTGAACTAATGCATTTGAATCATCATTCCTGATTTCCCCAGCCTCTAAACCAAGCATAGAGCAATTTCTTGTTCTGCTACACTCAAGTGGGATTCTTTTTGAATAGATTCTGATTGCACCTCTACTTTGGATACAACTGCATCAGTAACTCAATGGGCAATGATACAATTGTTTGAACAAAAGAGAACATTTTAGAAAAAAAGAAAGCCATTTTGAAGCATTAGTACCTTTCTGACTTAGCTATTGTTTTAAGTGATTGCTTTAAACATTACTCTCCTTGCAGGAATTGGTATTTTTATCTGCGGTTCTTTAAAGTGACCCGCTAACCATATCCCAGATGACTATTTTCAGTGTCAACAAGTGGCTGAGCGTCCTTGTCCTTTGCAGCCATCTGACAAAGGGACCTACTCTACTCTGAAGAGATCACATTCCAGAAAGACAGCTCAGAGAGCATCAGTGCTCTTTTACCCCCATTGTCACAAAATTGCCTGCCTTGAAGAACAGTTTTGTTGGAGGAAACCCAGCCATGGGCAGCAGAGTCAAGGAGCTGTTGCCTACAGCGTGTCTTGATTAGGTGCTACTTGAGGCACTTGGGGCTATTTCAGATCCAAAGAATCTGAGAAGATGTAGAATCCAGAAGATTAAATCAGGTTCCCATATCTCATTTAGATACGTAGGGGCAAAAGCATCTACTCCTACTTTCATATTCTTAGGGATTTCTCCACCTTTCACATTTTCTTGAGCTGTCTTTTGGGAACCATTGGGACCCATCTATCTACAGTGCATCTCTTTTGCCTGTATTCAGTGTCTTACAGCCTGTATGCTTGGAGGAGCAGGACAGAACTTTTAAAACATTAATTTGAGGAATTATCTTTACTGGGTGATCTTTTGGAGAGGACAGAAGTGAACTTGGCTTTCCCAGATCCTTACAGCCCAAAAATCCTTTCTTTTTCCTCTGGCAGAGCTAGAGGAGTAGATCAAGTAGAACTTATCTGCATAATGTGGAAAGTCGTAATAATGAAAGTCTTATCATCTTGCTCTTGTGAGCTGAAAATCTTAAGTATTAAATACAGTATGCCTACAATTGTGCTGTGTTTCTTATTGACTTCAGAAACCTAAGCCTTCAAAAAGCATAAAACTAACTTAAAATGAAATGTTAAATAAAATTTGGCAGTTCTGTTTATCTTCTGGTACTGGAGTTGTTTGTGGGTTGTTGTTTTTTTTTAAGCTTTTTCTTGAAAACAAGAGACCAAAACAGTTTGTTTTTTTTATGATTTTGTTTTTTTTTAGGAGGGGGGAGGGGGAAAAGGAAGCAGAAATTCTCCCCTAATTACAGAGCTTCAGAATCCATGACACCAAAGATCACCAGAATGACAGTATGTTCCTCAGATCTGGCAGTGTTTCAGACCAAGAAAAACCATGTATTGAGGATTAAGTTGGCTTGGCATGATATCAGAGCCCTGTAATGGAGCTGTTACCAACACTCCTTTTTCCTCTTCTAGCAGTATAATTAAACAGTTAACACGTTTCAGAAATAATGGGGTAATTAATGTAATTAAACAGGGCCTCTTTCACTAGAAAAGAGGGTGGTAAAGCAGCACTGCTGTTTCTCTGGTGTCAGAAATGCCCCTTTATTTCCGTCTGCATCTCTCACCTGTTTTGACAGAGGTAAAGAGCAAGGCCAAGTTTTTAAAATTGCTCAAAGTGCCATTTTCAAAAGCCATACCCCAGCAGCACACGTCTAATTGGGAAACTGGTGAGCTTTGGACTTAGAAAAAAAGACTGCTTAAACAGTTTTGAAAACACTGCCCCATATCTGCCTTGCATTCTTTTGCCCCAGTTTTACTCAGCTGACCTGGTGTGTTCATTTCAACAG
Seq C2 exon
ACCTCTCCCTCAGATGAGGCCAGCAAGAAGCAGCTTTTAATGCCCCATCGCCCATCGGTGGACCACTCAGATGAGCCCTTCCAGAGACAGAGGGCAGTGAGTGCTGTCAGCATCATCACCAGTGCCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112:ENSGALT00000031281:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=NA C2=0.550
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PU(21.0=75.4)
A:
NA
C2:
PF119333=DUF3451=PD(16.9=82.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]