GgaINT0091345 @ galGal3
Intron Retention
Gene
ENSGALG00000006112 | F1NDB7_CHICK
Description
NA
Coordinates
chr2:5480202-5480647:+
Coord C1 exon
chr2:5480202-5480317
Coord A exon
chr2:5480318-5480625
Coord C2 exon
chr2:5480626-5480647
Length
308 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GAATCATGGGAATTGTGCAGAAC
3' ss Score
0.61
Exon sequences
Seq C1 exon
ACAACGATGACTTTATGACCAATCCTGACCTATCAATTTGTGTTCCTATTGCTGTGGGAGAGTCTGATATCGAGGAGGAAGATGAGGAGCAAAGCACGTTTACAGAAATGGAGCAG
Seq A exon
GTAGGCAACTACAGTGTTTTTTTAGTTACATCTTACATGTAAGATTTCCTTAGTTCCCACCCTTTATGTGGATCCATGGCTCATGATGCAATTGTGTTATGGCCTTATCCTGCCTTTGATATGTTAGTAACTTCAGAATAAGTTACACCTGCATATCCAAGAGCAAAACTCAGTCTCCAATAAGAGACATTTCCTTTCTCTGTGTTCTTTGTGCTTGTCTAGGCTAATTCTTCTAACAAGAGCAATTAAACCATTTCTCACACAGGAGCCTGTTTTTTCCTTTCAGCTGAATCATGGGAATTGTGCAG
Seq C2 exon
AACAAGTCTCAGGTTGTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112:ENSGALT00000009918:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.777 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=FE(14.1=100)
A:
NA
C2:
PF065128=Na_trans_assoc=FE(2.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]