GgaINT0091989 @ galGal3
Intron Retention
Gene
ENSGALG00000009722 | DYNC1I1
Description
NA
Coordinates
chr2:23940062-23944615:+
Coord C1 exon
chr2:23940062-23940121
Coord A exon
chr2:23940122-23944499
Coord C2 exon
chr2:23944500-23944615
Length
4378 bp
Sequences
Splice sites
5' ss Seq
TGGGTATAT
5' ss Score
2.05
3' ss Seq
TGTTCTGTGTTCAATCTTAGACG
3' ss Score
7.86
Exon sequences
Seq C1 exon
GACCTTGCAATGGGACACAGACCCCTCAGTGCTGCAGCTCCAGTCTGACTCTGAACTTGG
Seq A exon
GTATATGTCTGCTCTTTATGTTATTTCATTTATCATTTCTTTGCAAGAGTTACGCTGCGAATGCTTCCCAGATGAGCTGTTTGTATGTGATTTTCATTTGCTTTGTTGACTCAGAAAGACCATAATTTAAGTTTCCTTTTTTCAGTTTCGTCAATAAGAAGCTTCAGCAAAGCCATCTTTGTGGAAAAAAACTACTATTTAAAGAAGCTCATGAAAGATAAGCTGCTATTTCTGTTGCCCGAAACACAATACAAATAACTATTTCATTACAGATGAAATGTTATTATTGTGGCACTTTAATGTGCATGTACAGTAACACTGGTCTTGTTTGTACCTATTGATTCAGACTTCTCTTTCTGAATCATTTGCAAGGTACTTTTCCCCCTTCCTTCTTGTTTTTGTTGTAGTTATGTTGTTTCCACATGCAGTAACCTACATGCAATAACAATTTCCCCCATTTCCTTAGGAGCTGTATATGTATTTATAATTGTGCATTTAAGTATGATCATAGTCCACTAATTGCCATTTAAGTTGAGTACAGGTCAGTCAAGCATTACCTAATTATACTAGGGCTAAAATTAATATTCTCCAGTTTTACATGGAACTTCTCTATCCTAACCACCTGAAAAAGTTGTTTAGGTAGCAGAGTATAACTAGTATAATTAAGGAGAGTACCAAATATGTTTATATTTTAAAACATCACTACAATAAGGAACAGAAGTTCATGTTTGTCATGAGTATAGCTTAGCATCATCAAGAGAAGTCTGACAGCATGAAGTGGTTCTCTCTTATCTCCTGCGAGCAATTAAGGAAAATCAGAAACAATGGCTTTTCTAAGCAATATCTCCAGATCTAACATCAGCACCGTGTTATTGCTGAAGCTCCAAGTACATAGTCATGGCTGGTAACCACAAAACAAATGCTTTAATAAGTTACTGAATTCTTTGTGGTCACTGAAGTTATCAGAGTGTGTTGGCAAGTGAAAATGCTGCTCACTACCATCTCAGACTGAATTTTACAGTCTCTCCTAGATAAGAAAATTGGGTGCTGTATCTTCATCATAAGAGGCAGCAAAAGGAGAGAAAATAAATAAAGGAAAATCAGCAAGACCTGAAGACATGAAATGCCCACCTGCAGAGATACTTAGGATAAATTGTTTCTCTGAAAAGGAAAGGTAACTGTCTTTCAAGTTCTTCAGAACTTGACTCATAAGCAAAACCAAATCTCTGCAATGAATAATTGTTCTACCTATGAACTGCTGGGCTTTCCTGTCTGTTTTCAGGCAAGTATCTTATTCTGCTGCAAGTTCTTTGTGTTTTCTCGCCAGCAATTCATGTGAAATTCATTCACCATTCTCTAGGCTTCAAGAAAAAACAGTTTCCCTTTAAGTATTAATTAACAGTGCTCCCAGCTGCAGTTAGTGCTGTTTACCAGGAAAAAAGACCAGGAATAGAAAGTATCCAGAGCGCTTTCTAAATAGGCCTTCTCCCTATCCAGAACAGTTAGGAATGCTTTTATTTCAGGTGTGATTTCAGGTAGATCTAACATCTGCAGCATCACCTGGATCATACAAAAGGGGAAGAGTTTCTAAAGCTGTTTGGATGTGTGGAAACCTTTTTGAAATCTCAGCTGCCCTTCCCCAGAAGCTGGGATTTAAAGATGAGCACTCTCAGAAGTGAAGGTCCTCAAATGGCTGTGCAAGGCAAGGTGGTTTGATTCTCATAAGGATAAGCCGGTGCATAGCCACAAGTCTTCAATCTTTTAGGAGCAGTAAAGACAGAAAAGAAGAATGCCAAAGAATGAACCCATGAGTATGCTCCGTAAGCCCTTTGTCTTCTACAAGGCAGAGTTAGACAGAGGACCATGTATTTCTCTGGTATATGGCTATGAGACTAGATAAAACACCAGCATGAAAGAAATCCTGCAGTCAGGATGCAAATGATGTGTGTAGCTAAACACTTCACATCTTTCTTTTCCTACAGACAGAGGATTCAATTTTAATGCATAGGCTTTAATTACTGTCTTCCTACTGACATCCCATAGGCAGTTTTGAAAGGAATCCTTCAAAGTTTATGTGCTCTCTAAGCTGAATATCCAATAAGTTGTAAATGAAAAGAATTATGAGTGTCTCAGTGTGTATGGGAGATGAGACATTTTAGTGCTGCCCTAAAAAGAATTAGACTAGAGCATTATAGCCCATATTTGGCAGAGTCCGTGTAGTGAAAGGATGTTCCTGTTGTCCCTAAGTGCTTAGGACCAAGAGTTAGGTTGGCTTTTTATCACATGAGGGCCATTACAGGTTGATTAGTAGGGTCAAAAAAGGAAAGACCACATTCATTCAAATGAAGATTTCACAGTCTTCATCGGTTACAGTGACACTATGCATTTAGACAACCATCAGCAGTTCCTGAATAATAAATGTTTTAGGTAAAAAATTAAACAAATTCTCTCAGCACGGTGTTCTGGGTGGTAGTTCACTTCTTAGTTAGGAATCTAGACAGGGGCTAACCCAACAAGCAGTTAAATCCAGCTCTACATGAGGACTGGTATTCCCCCATCCCTAGCCAGTGAAAGAGATGGGAAATGACCTCAGGTAAAACTTCTGTTAGAATTAGGCAAGGGTCTAGATTAGACACATGATTAATTAGAGCTGATACTTAACAGAAGCTCTTTCAATGAAGGAGGCTTAAGAATCTCAGTAAAAGGAATCAGATTGAGATGATGGAGGACTGATTGTGAAGGAAAATCTTTCAAACTTGATGTCAAAGGATGGAAAAGCATGTAAGATTTTTCTGGGGAAGATATTTATTAAAGCTTAAATTCATGCATGCTCTCATTTAAAGCAGCTACAAGTGTACTACTAATGCTCTTGTTGGCTGTTACAGATTCTTAAAGTGTATTGAAAGCTACAAAAGTTTTTCTGCCTCCCATAGAGAATTTTCAGGGAATCCATGCTTTTATTCACGTTGGCACAGTCACAGGTGTTTGTGAGGATGGTGAAAAGAAGAGGTTCAGAGCTGTAACAACTCTTACTGCTCTAGTGGTCTGTTATGTGATGTGGCTGATTCATACTGATTACCCACTGAATCAAATTGCATTCAGCTTAATAACAACTCAGCCAGTAAAACAGATTGGAAAGATATATAGCTGATACAGCCTTAACAAGCATAAGAGTTCAGTAGGTGTCGTCCAATGATGACCATTTCTTTTTGAATACTCATTTTCTCTCAGACATCAGTGTTAACTGAATACCTGAACCACTGTGAACGAATGAGATAAAAAATAAGTTTGACCTCTGTTCTCCTGGCAGTCAGGAAGGCAGAGAGGAAATGGATAATGCGTATGAATTTTCCGCTTTTCCAAATTGCTCTCCTTAATAACGTGACAGTTCAGAAACGTTGTGTCCCCGGATTTATATCCTGTAAATATGTAAGCATGCTTACACGTGTTGATCTAAGCATCTGGACTTATTTAGTTGATCCATTTATTATTTGCATATATATATTTTTGTCTGCTGAAAGTTGGTTTTTTTTTTCCAGTAAAAACTAGATTGACATCTTTGCTTATTTGCTTATTCTTCACTCCCTACAGTCAAATAATATTCAGGAAACAAACTGATATACTTTTTTCCCACCACCGTTGGGTGAACTGCATACAACTAAAAGTGTTTGTGATCATGCACAGCTGTCTCTCTCCCTTTCCCCTTACCCAGCTACACTGTTGGTTGGCTCTACTGATTTAGTTCACATGGCTCATTTAAAGTCAGGGGAGTAGTACAAAGAGAAGGCTCTATCTGTTCCAGGTGTGTCTCAGGGCTCCACTCTAACCCTTGCATTAGGACTCTAATGATTATGAACCTACAGCAAGTCCACTGCTATTAACCCCTGTGGAAGGGAGAATCTCTTTATGGAAATTATGCACCCTGCTCTCTTACTGCTCTCAGGTGAACATTTGACTGTCCCAGTCCAGCATATTTAATACCCACTGTGCCTCTTGCACTGTTGATTATCTCAGGTTGAGGACTGAATCTCTTGAATAGGCTGAATGTTGTAGTAATAACTGTGTGAAGGAGGAGACAGGTTTGTTGCGTGTTGTGAGGGACACAAGCAGGTCGTACCTTGCTCCCATTTACAGTTCCCCTCAGCAGCATAACCTAGATCCAGAGAGGTTTTAGTGGCTATATTTTATTATGGCAAATGATTCCCGAGTTAATTTTCCTCACTGTAATTAGGTTCTTTTCATCCATAGTGCATTGTGTTTCATCTTAGCAAACACTGAAGTATTTTTTAATCCTGTCCATAAAAGCAAACACTTTTGTTCCCACTACTGACTTACACCTAACATAACTAACCTTTTGATGTTCTGTGTTCAATCTTAG
Seq C2 exon
ACGCAGACTGCACAAACTAGGGGTGTCAAAGATTACCCAGGTTGATTTCTTACCTCGGGAGGTGGTATCCTACTCCAAGGAGACCCAGACACCTCTTGCCACACATCAATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009722:ENSGALT00000015824:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=NA C2=0.575
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
NA
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]