GgaINT0096287 @ galGal3
Intron Retention
Gene
ENSGALG00000013855 | E1C520_CHICK
Description
NA
Coordinates
chr2:67484085-67484566:+
Coord C1 exon
chr2:67484085-67484193
Coord A exon
chr2:67484194-67484455
Coord C2 exon
chr2:67484456-67484566
Length
262 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GGTGCTGGTTCCTCCCGCAGGTA
3' ss Score
9.88
Exon sequences
Seq C1 exon
TTCTGGGAGGTCATCAGCGATGAGCACGGCATCGATCCCACCGGCAGCTACCACGGGGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAGGCCACAG
Seq A exon
GTAACTGCTCCGCGGAGCCGGTTTCCTCCTTCCTCTGCTCCAGGAGAGGGCACGGGGACCTCCCGTGTGTGTGCTGTCGTGAAAGCTGTGCACAGCGTGTGGTTTTCTGGCACAGCCCTACAGCTGATTTGTGTCTTAGCCCCTGATTTGCTCCCAAGAATGCCCTCATGCCATGGCTGGTGACTTACAGCGAGGCTGCTGTGAGCACAGCAGTGCTGCTGTGGCTGCGGGGCTGTAATGCTGGTGCTGGTTCCTCCCGCAG
Seq C2 exon
GTAACAAGTACGTCCCCCGTGCCATCCTGGTTGACCTGGAGCCCGGCACGATGGACTCGGTGCGCTCCGGCCCCTTTGGACAGATCTTCCGACCCGACAACTTTGTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013855:ENSGALT00000037216:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGAGGTCATCAGCGAT
R:
ACAAAGTTGTCGGGTCGGAAG
Band lengths:
215-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]