MmuINT0168103 @ mm9
Intron Retention
Gene
ENSMUSG00000045136 | Tubb2b
Description
tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
Coordinates
chr13:34220741-34221223:-
Coord C1 exon
chr13:34221115-34221223
Coord A exon
chr13:34220852-34221114
Coord C2 exon
chr13:34220741-34220851
Length
263 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATT
5' ss Score
5.99
3' ss Seq
CAGCTCTTGTTCTTCTGCAGGTA
3' ss Score
9.81
Exon sequences
Seq C1 exon
TTTTGGGAGGTCATCAGTGATGAGCATGGTATAGACCCCACTGGAAGTTACCATGGAGACAGTGATTTGCAACTGGAAAGAATCAATGTATACTACAATGAAGCAACTG
Seq A exon
GTAATTACTTTTAACACCCCATCTTCAATTCTGGCATCCCTAAGCTCTGCTCTTATTTGAACCCAGGAGAAGGTGGCTTATTTTAGGATGACCATTTTTGGGGTGGGGTAGCCTCTTCTGTGCCAACCAAACCCTTTGAAAGCTTGGTCATAATAGACCTTTCTTTGTTTGGGGGTACCACCAAACAGGAAGGAGGTGGGACCGAGCCCTACTCTATAGAAGATACTGCCTGGAGGGCTAAGCCAGCTCTTGTTCTTCTGCAG
Seq C2 exon
GTAATAAATATGTGCCTAGGGCCATCCTGGTGGACCTGGAGCCAGGCACAATGGACTCAGTCAGGTCTGGACCATTTGGGCAGATCTTCAGGCCGGACAACTTCGTGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045136-Tubb2b:NM_023716:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGGAGGTCATCAGTGATGA
R:
CGAACACGAAGTTGTCCGGC
Band lengths:
220-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: