Special

GgaINT1028922 @ galGal4

Intron Retention

Gene
Description
Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P32882]
Coordinates
chr2:66368218-66368699:+
Coord C1 exon
chr2:66368218-66368326
Coord A exon
chr2:66368327-66368588
Coord C2 exon
chr2:66368589-66368699
Length
262 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GGTGCTGGTTCCTCCCGCAGGTA
3' ss Score
9.88
Exon sequences
Seq C1 exon
TTCTGGGAGGTCATCAGCGATGAGCACGGCATCGATCCCACCGGCAGCTACCACGGGGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAGGCCACAG
Seq A exon
GTAACTGCTCCGCGGAGCCGGTTTCCTCCTTCCTCTGCTCCAGGAGAGGGCACGGGGACCTCCCGTGTGTGTGCTGTCGTGAAAGCTGTGCACAGCGTGTGGTTTTCTGGCACAGCCCTACAGCTGATTTGTGTCTTAGCCCCTGATTTGCTCCCAAGAATGCCCTCATGCCATGGCTGGTGACTTACAGCGAGGCTGCTGTGAGCACAGCAGTGCTGCTGTGGCTGCGGGGCTGTAATGCTGGTGCTGGTTCCTCCCGCAG
Seq C2 exon
GTAACAAGTACGTCCCCCGTGCCATCCTGGTTGACCTGGAGCCCGGCACGATGGACTCGGTGCGCTCCGGCCCCTTTGGACAGATCTTCCGACCCGACAACTTTGTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012821:ENSGALT00000020914:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):

C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGAGGTCATCAGCGAT
R:
ACAAAGTTGTCGGGTCGGAAG
Band lengths:
215-477
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]