GgaINT1028922 @ galGal4
Intron Retention
Gene
ENSGALG00000012821 | TUBB2B
Description
Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P32882]
Coordinates
chr2:66368218-66368699:+
Coord C1 exon
chr2:66368218-66368326
Coord A exon
chr2:66368327-66368588
Coord C2 exon
chr2:66368589-66368699
Length
262 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GGTGCTGGTTCCTCCCGCAGGTA
3' ss Score
9.88
Exon sequences
Seq C1 exon
TTCTGGGAGGTCATCAGCGATGAGCACGGCATCGATCCCACCGGCAGCTACCACGGGGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAGGCCACAG
Seq A exon
GTAACTGCTCCGCGGAGCCGGTTTCCTCCTTCCTCTGCTCCAGGAGAGGGCACGGGGACCTCCCGTGTGTGTGCTGTCGTGAAAGCTGTGCACAGCGTGTGGTTTTCTGGCACAGCCCTACAGCTGATTTGTGTCTTAGCCCCTGATTTGCTCCCAAGAATGCCCTCATGCCATGGCTGGTGACTTACAGCGAGGCTGCTGTGAGCACAGCAGTGCTGCTGTGGCTGCGGGGCTGTAATGCTGGTGCTGGTTCCTCCCGCAG
Seq C2 exon
GTAACAAGTACGTCCCCCGTGCCATCCTGGTTGACCTGGAGCCCGGCACGATGGACTCGGTGCGCTCCGGCCCCTTTGGACAGATCTTCCGACCCGACAACTTTGTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012821:ENSGALT00000020914:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGAGGTCATCAGCGAT
R:
ACAAAGTTGTCGGGTCGGAAG
Band lengths:
215-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]