GgaINT0099017 @ galGal3
Intron Retention
Gene
ENSGALG00000011164 | CHN2
Description
NA
Coordinates
chr2:33714822-33717202:+
Coord C1 exon
chr2:33714822-33714995
Coord A exon
chr2:33714996-33717124
Coord C2 exon
chr2:33717125-33717202
Length
2129 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
CCAAGAACTTTTTGTTTCAGGTT
3' ss Score
7.23
Exon sequences
Seq C1 exon
ACTGTGGGTTGAACGTACACAAACAGTGCTCCAAGTACGTTCCCAACGACTGTCAGCCCGACCTCAAGAGGATAAAGCGTGTCTACTGCTGTGATCTGACCACACTGGTGAAAGCCCACAATACCCAGAGGCCAATGGTGGTGGATTCCTGCATCCGAGAGATTGAAGCAAGAG
Seq A exon
GTTTGTATGCTTCAAAAGCAGCAGGCGTGATAAAATGACAGTGACTTGAATTACATGTTAAGATAAGAGAGCAGTATGCTCTTGTACCATAAGGACAGGATTTGAGAAGGGCTTTTTTTTAGCGTAGGTGATACGTTGCTTTGCATTAGCTAGTAAAATTAAATCATGACATTTCATAATGCAATTTACTGAAATGCTTTCTGAAAACATGTCAAAACAGGTATTACATTACACTTTTGAAAGGGGTGAACTTTAAAGTGAACTTTAAGTTCATGTTTATGTGTCTTTTTTCATCATTTTGTTTTAGCATACCTTGAGACACTTCAAGCTTCAGAGTAATCAGTTTAAATCAAACCCATTGTTAATAACTGTTGAGGACATTCTGGGCAAGAGCACTCAAATGGCTGGAAATGACTCAGGCAAATGAGGTCACAGATGGTGGCATTTTGTAGTATCTTGCAAACTACTCACATCAGGAATATTTGCATGACACTCACCTGCTGACTGATGGATGCCAAGGCTCAAGCAGCTCATCACAGCCCATCCAGCTTGAGAAAGGTTTTTGCTACTCAGAGATTCATGCCAGATTGAAAAAAAATAGCATCTCTCCCCCAGCACATCTACCAGAGACAGGAAGGATCACGTAGTTTTGCTTTGGATAGCAGTTGTGTGTGCTGTGCTGCCCAATAAGCCAAATTTCCTTGTCAGTCACAGCTTTAGCACAGAAATCTCATAATGTTGAGTTCGTGGCATCACAGTAATCTGCATAGCAACACACTGATACTAGCCATAGGGATTTCAAAGCCACGCATCATCTCCTGAAATGAATGAAAGATTTACAAGTAAATCCCCTGCACTGCTCTGTAAAGCTCTACCAGGATTATATCATCATTGCAGGGACAAATAGAATAGCTTGGAGTAAGACAGAAGAGCTTTACTGAGATGATACAACAGTCAGCTACACTGCATTTGAGATATAATCACTTACTTGTACATTTATTGATTAAGAGAAAATCTGCTGCCTACTCTTTTTTTTTCAACATCTTTACCTATCTTTCCATAATTGTTGTAGAACATAATTTTTGTTTTACAATGCTGATTTTGTTCTTAGGAAAACAAGGTGTGTTGGGTCCTATAGATAGGTTAGCACTGTGCATAGGTGGAATAAGGAGGTCTAAGGTTAAAATAAGTAACATCAGTGTAACTGTAGTTTGTTAGTTTAGCCTGATTTGCCGAGCTGTCCTTCATTTCATGTTGCCTTGGAGTAAAGGTGGGAGAGCATAAAGCAGGTTTGTTGTGCTGGAAGAACTGCAGAAGGGATATAGTGACGTGGAGAACAGCATCCATCACATATATCAGCTGTGCATAAGTGTAGGCTGACAGCAAAACTGGGAACAAATGTGCTCAAAGGGAAAGGCGGTCTCTTACTTTCATTGTTATTTATTACTAAGCAAATGGTGAAGGCAAAGAAGGCCTCTAAAGCTTCATTAATTATGGACAAATACAGGAAAATCTCCAATATAAAAAGTGTAAATCATGGCAATAACATCCTGCCATTAGCGATGCGCAATATTTGATAGGACAGTGATAGGACAAGGGAGAATGGTTTTAAACTAAGACAGGGGAGGTTTAGGTTAGATATTAGGAGGAAGTTTTTCACACAGAGGTTGGTGACACACTGGAACAGGTTGCCCAAGGAGGTTGTGGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGGCAACCCTGCACATAGCAGGGGGGTTGAAACTCAATGATCATTGTGGTCCTTTTCAACCCTGGCCGTTCTATGATTCTATGTTTTTCTTCTAGCATTACCTGCTGTGTACCTACTGTTATTTTCTGTTTGTTACAAAATCAGAAAATATAAATTCTAAAAATTTTTAATCCTGTTAAAAAAGCTTTTTAAAAATGCCTTTATTTTTCCTTAAATGCTCCAGACTTTCACATTGCCATTAACACTTCGCTGTATTTATCAGCCCCACCACTGCTTTTGCTTTGTTGTTTTTAAGTCCATTGCTTTTTAACCCGGTGATTATTGAAGCAAAGTTAACCAAGAACTTTTTGTTTCAG
Seq C2 exon
GTTTGAAGTCTGAGGGCCTCTACAGAGTCTCAGGCTTCACTGAGCACATTGAAGATGTGAAAATGGCCTTTGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011164:ENSGALT00000018199:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(37.7=33.9),PF087466=zf-RING-like=PD(48.7=32.2),PF138311=PHD_2=PD(72.4=35.6),PF0062022=RhoGAP=PU(9.1=23.7)
A:
NA
C2:
PF0062022=RhoGAP=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]