MmuINT0036122 @ mm9
Intron Retention
Gene
ENSMUSG00000004633 | Chn2
Description
chimerin (chimaerin) 2 [Source:MGI Symbol;Acc:MGI:1917243]
Coordinates
chr6:54240261-54243109:+
Coord C1 exon
chr6:54240261-54240434
Coord A exon
chr6:54240435-54243031
Coord C2 exon
chr6:54243032-54243109
Length
2597 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
3' ss Seq
ACCCCACCCCTGACCTGCAGGAT
3' ss Score
8.74
Exon sequences
Seq C1 exon
ATTGTGGGTTAAACGTACACAAACAGTGCTCCAAGCACGTCCCCAATGACTGCCAGCCAGATCTCAAGAGGATCAAGAAAGTGTACTGCTGTGACCTCACCACGCTTGTCAAAGCTCACAACACTCAGAGACCCATGGTGGTGGACATATGTATTCGGGAAATTGAAGCAAGAG
Seq A exon
GTTTGGAAAATACTCTCTAACTGTTGTATTTATGTTATATTAATTATATTACATGTACTGTGTTATATTGTATTGATTTAGCTTTTTATTTTTTAATTGAGGAAACTGACTCATTTTAGTGCCCCCTTTAGGACAATGGCTTGCATACACACAAAAAGCACTACAGATAAATACGCTATAATAGCCAAATAATCAGGTCGAATTCCACTCCTGTATAAGCCATGCATGTCCACGTTCTGCAAATGTTTACTGAACGTTTACTACAGGCTAGAGAGCAATGATCTGAAAGTCTCTGTTCTCAACCTCAAGAATCCATACTGGAGACTCATTCGGGGAGTCAGGGAGACAAGTAAACACACGACTGTACCCTAAAGCTCCACAGAGGAAGGGGTCTTCAGCTTGTTTGAGGACCTCCAACAAGGGACAAGGGACTGGTCCCCTTTTGAATATGCTTCCTCCCGTGTGCCCCAGCAGCTGGTGAGGAGATCAGACCAAGTCTATCCGCATGAAGGACCTGGTACATGCCAGTATGCAGGGAGCATCGTGTGCTCTTTCTTTCTACTTCATTGGCATGGCCAAGGGTTTTAGTTACTGTTGTAGAAAACATTTAACCTCAAATCAGGGGTTTCTACTCTGCCTTTGCTCATTCAGTTCCCAGATAAGACACACAACTTTTATATTTATAATAAGCCTTATGCACTAGAGCTGGGCAGATATTAACCCTCTGTTATTGGTATCTATTTCCCTATCAAGAACCCTGAGTTATAACTGGCTATATTCTTCACAAACTGCTCTTAACCCTAAGTTTTTTCATAACTCACCTACCCCATGGTGACTTCTCCCCTCTCCACTACCTTCTCCCTCTCTCCTTGTGGTCCTCCTCTGACCCCAATCCTGGGAACCCCAACCCCACCTCTATCTTCTGCCTAGCTATAGGCATTTTCATTCCCCAATCAGGGATAATTTGGGGAGCAAGATTACATAACATCACTTGAGTACATGGGGATTCTATCATCTCTGGGGGGCAGCTAGGCTTGGGGATGGACTAATATTTAACATTACAATACATAGCAAAAACAAAAACAAAACCCTAAACCTCAACAAGTTACTTTTGTTGTTGCTTTACCAAAAAGCCAGACAACAGCCCCTGGAGGAAGGGAGCATTTATTTTGGCTCATGTGTTGGGAGTATAGTTCATCATAGGAAGCTTCGGTCAGAGAAATGTAGCCTGAAGGGTCACACTGTGTCTACAGTAAACAAAACAAACACCCCAGAGAGGTGACTGCTAGTACTGTGGATACTGTTCTCAAACCAAATGTTTCATTAGAGTAAAGGGATAGGAGAACTGTTAACGGAGGATGGCTGGCAGCCTCTACTGCTCTGCCAACTCTAGCCCATAGCTTGGGACTGCCTCTAGATGTCCTTTTCCCTCTATAAAGGAGCTGTGTGCCTACAGCTGTGTATTCCTGTAAACTGCTACGACCTCCCCCTCTGGCAATGCCTGTCTCATTCTTGCAGAGATGAGCTTGCATGACCGCCTGGAACAGAGTGGCACACTGGGTTTATCTTGTGGGTTGCTTCCAGTTGATCAAGAGTCACTACTATCTAAGCATGCCTATCTGAGAGCAGAGATGAGATTAACTAAGGATGTCTGCCATGAGACAGTAGAGCCTCGTCAGATTGAGCATGCCTACCACAGTCCCAGGGAAGAGCAGAGGCACCCATCCCTTGTATTCAGTACAAGGTTACTGGCAGATATTACCATAAGAGTAGAAATTTAAAGCCGGGAAGTGTGTTAGTTATCCAAAGTTTGACAGAATAGTTGTTTACTTGTTTTTGCGTAGCTCAGTTTTGACACCAGTTCAGTTTTGGCATTTGGAATCTGAAACCTGATCCTCTAATCCTGTTGCTGTTTTCATCTTACATGACACCCACTGGGTGAAGGAGAGCGAACTAGGTTCAACATGTTTCCAACACATCAGTATAGTTTGACAGACAGACATCCTCTTTCTTACCTTGATTAAGTTTTCAGACCATTAAATAGAATTGAACTTGACTGCATCTGTTTATATAATTAGCTATCTAAAAGCAGAATAAATCAAGCACACTTAGCATATTATCTTACCTATGATTTAACATGAAATGTTATAAATTTTAGATTTCTCCAATGAAGTCAGGATAATCTGTGCCACACACATTCAAGGGTGGCTATGTCCAATACACCTGAATAAGTTGCCAGGCAGAAAACTGGGCTCTGGCTGCATCAGTAAAGTAGGTGTGCAGAAGTGATGAACAGAGGTAGTTAGAGAGAACCTCAGATCTCAACTCACTTTGTAGCCAGCCAGGAGGAAGAGCTGGTCTCCACGAGATGCCCATCTCCACCAATCAGATGGAGACAGGCACCTGTGGAGATTGGCAGGAAGATTCCAGGGTCTTGGACTGCAGGGCGGGAGGCATCAATCAGATCACTCGGTGCAGCTATAACATGAGAGTGACTTTATTAGATACCATGGGAAAGCAAAGTTGAAGTCTCCTCCTCTCTCTTGCCGCCCCCACCCCCACCCCCACCCAACCCCCACCCCACCCCTGACCTGCAG
Seq C2 exon
GATTAAAGTCAGAAGGGCTTTACAGAGTCTCTGGATTCACAGAACACATTGAAGATGTCAAGATGGCGTTTGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004633-Chn2:NM_001163640:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(37.7=33.9),PF0231811=FYVE_2=FE(57.4=100),PF087466=zf-RING-like=PD(50.0=33.9),PF0062022=RhoGAP=PU(11.1=23.7)
A:
NA
C2:
PF0231811=FYVE_2=PD(1.0=3.7),PF0062022=RhoGAP=FE(20.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: