BtaINT0038248 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020931 | CHN2
Description
CHN2 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q0VD41]
Coordinates
chr4:67077022-67081792:-
Coord C1 exon
chr4:67081619-67081792
Coord A exon
chr4:67077100-67081618
Coord C2 exon
chr4:67077022-67077099
Length
4519 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
3' ss Seq
CTATCTCCTTTTTTTTACAGGAT
3' ss Score
11.12
Exon sequences
Seq C1 exon
ACTGTGGATTGAACGTACACAAGCAGTGTTCCAAGCACGTTCCCAATGACTGCCAGCCTGATCTCAAGAGGATCAAGAAGGTGTACTGCTGTGACCTCACGACACTTGTGAAGGCTCACAACACACAGAGACCCATGGTGGTAGACATCTGCATTCGGGAAATTGAAGCAAGAG
Seq A exon
GTTTGGAAAAAAACTCCTTATTATAGTGACTTTCTTTTTAGTGTTGTCAAGGAGACTTTATTCTTATAATTGTTAAATTGACTCTCCACTATTGATCTCAGGGAAATGGTTTGCATGCACAAACACACACACACATACACACACACACAAACTAAATCCAACCAATGACATCAATTTCTGTTTCATATAAAAACCATGCAGGCATGCATTTAATACATGCTTGCCAAGCATTCATTATGTACTACACACTGGGGACATAAAAGTTATAGTTCATGCCTTTAAGAAATTCATAGGATAGTATACAGAATCAGGGGTGCAAATACATAAATCTATAAGTGCATACATGCATGTGTGCTAAGTAAATGCTGTGAGTACGTGTATTCAAAATACCATGGAGTCACAAAGAAGGACATTTTAATCTTATCTGAGGAGAGTTCAGAAAGGGTTTATGGCAGAGGTGAGGTCTAAATCAAGTCTTTTAAAATGCTTCTTTTAAAAAAAGTTAAAAAGTTATTGGTCAACACATGTATTTTCTACCACATAGAAATTTATTCCTAGTATTGATTCTGTTTATTTCAAAGAGGAAAGCTAAAGATTGAAAGATTTGTCCACCAAAAACTGACAATACAAGGAAGATGGGAACATTTCAAAGAAAAGATTCTTTATATTATGCCTGAGTCATCTTTCCTTTATTTGAGCTTTGTTTGGCCATTTTTCAGTATCAAAATGTTCAGTGATATGGTGGTTATAGTGTAGCTGGAGAGAATTTGGATTGTTGGATGTAATCTGGGTAATTGGAGAGGCTTTTACAAGTGTTGCCATGGATGTACCCTACTATAGCTGGTACCCTTGTTGTATCCAAATTGGCTTACTATCTGCTACAGGTATTTATGCATTTGCCAACTATCCCATTCTTTCCAAAACAAAAGATGATATTATAACTTGTTTTCCCAAACCTTTTAGGGATAGGAAATGATTCCCTCTTCCATGCAGGATGAAAACTATAGCTAATCTGTTCCCTTAAGACTCGCTCATTTGATCTCAGATTGTAAGAAATGCCTCCTGCCTTTTGCCTGCTGGGTCTGTTAGAGTTGAGTAGGGGCTTTGGGATCTGGTGAGTTCTTGATGCAGGGCTGAGGTGGGTACAAGTTGAGGAGATGCCCTGGCTCTGGATGAGTGGCTTGGAAGAGCAGCCCTGGGTACTGCTGTTTTGAGGGTTCTGCTACCCCAGAGGGTCAGATAATCAGCCTCTCCAGAGCTTACCACCAGGACCTGCGCTTCTCTGAAGAAGCTGGGATCATCCCATGGTGATCCTCATCAGAGACTGCCAACAGCTGGAGGCAAGTGACTACCACATCTGATGGCTAATGTGTCCACAGAAAGCACAGCACTAAGCATGTCTAGTATAAGAGCTAGAATAGCACAAGTTAGGAATCTGTGCTAGGAGTCACAGCAAAAGGACTGGAGCTACAGGCATTAGGGTCCCATGCATGTGAGCAGAAACCAGAGAATGGGCTGGAAGAAATTCAGGTGACGCTTCCATTTCCAGTTTCACCACTGAAACATCTTATCCCATCTTCAATCCATAGTCAATTTCTTATTGTTCTCCAGTTGCCTTTATGGCCATTTGTTTCTGCATAATGTGGCAGAGTGAAAAGATCATGAACTTGAAGTTAGATTCCCAACCATTTCTCATATCAGCTACAGTATGACCTTGGGCAAGTTACTTACTCCATTTGAATATCTGTCTCCTCATCTTCAAAGTGAACAGAATCAGTTGTAGCTCATAAGGTGATTGATTCATGCTTCCATGATGGCTCAGATGGTAAAGAGTCTGCCTGCAATGTGGGAGACCTAGGTTTGATCCCTGGGTTGGGAAGCTTCCTTGGAGAAGGGAATGGCAATTCACTCCTGTATTCTTGCCTAGAGAATTCCACAGACAGAGGAGCCTGGCAGACTACTTACTGTCCATGATGTTTCAAGGAATCAGACACAACTGAGTGACTAACACTTTCACTTTCTTTTCTTTCATCTTCAAAGTGAACAGAATCACTTGTACCTCATAAGGTGTTGATCCAGATAACCAGCCCAGTACAGAGCCCAACATATAAGACTCAAGTGTTATTTCTTTTTTACCTGGTATGACCCAATCCTTTAACTCCACCTCCAAATCTGTGTGTCTGACCAATGTACTTAACCCAGATGCTTTCATGCTATCACAGAGACCCCAACTAATAGTGACATCAACATGGAAACCTCTCTCTCTCCAGCAGCAGTCCAGGGATGGTGGGGCAGCTGCCCAGAGGCAGGAATTCAGGCCCCCAGCTCATTACCCCATCATCTCTGAGTGCTGCCCTCCTCTCTATGGTCCCAGATGGTTATCACCATCTCAGCTGCGCTCCGGCCAAGAGCAAAAGGGCATGCCCTTCAAGTCCACAGGCAGCACTGTACACATCACTTCCGCTCTCTTCACATTGGCCAGGATTTAAGGGCCTCTTCAATGAGTGTTGTTCTAAAAATCCAAAGGTTTCTTCACATTAGAGGAAGGGAGAATTAATATTGGAAGGGAGGCGGCAGCCTCTGCTAACTCTGGTAAAGTCCAGCCCATCCCTCATGACTTCCTCCATTTATTTATTTATTTATTGTTACTGTGGACCATTTCTATCGTCTTTATTGACTTTGTTACAATATTGCTTCTGCTTTATGTTCTGGTTTTTTGGCCACGAGACATGTGGGATCTCAGCTCCCTGACCAGAGATGGAACCCACACCCCCTGCACTGGAAGGCGGAGTCTTAACCCCTGGACCGCCAGGGAAGTCCCATGACTTCCTTAAAGGCAGTTCCTCAGTAAGACCTTCCCTGTAGCTTCTTCAGTCAGAAGGCAGGGTTACTGCCCGCTGCACTGTGCTCCCACGTGCCACTGTGTACTCACCTCTGTTGTAGGGTGGGTTACAACTGGACCAAGGCATGCTTAATGCACCACCAAGTAGAACCAAGTCTCATCTATGGGCCAGTTCAGTTGATCACTAGTGGCACCCCAGACAACTGTCCTGAGACAAATTCTAAATCTGAGTGGGGCTCAGTAGGAGAGAGAGCTGAGGTCAGTGAAGAGTGTCTCTGATGGCCAGAGGAGAAAGGAGGGGCAGTATCTGTGTCATGCATTTGCTGTCTCTGATGCAGACCTAATATTGCTTTTGTTCAGTTCCTAGGATCCCATGGACTTCAACAGGCCAGGCTCCTCTGTCCTCACTATCTCCCAGAGTTTGCTCAAATTCATGTCCATTGAGTCAGTGATGCTATCTAAACATTTCATCCTCTGCCACCTTCTGCTTTTGCATTCAATCTTTCCCAGCATTGGGGTCTTTTTCCAAAGAGTCAGCTCTTTGCATCAGGTGGCCAAAGTATTGGAGCTTTAGCAGATCCAGTGCCAACTTTTATATATGGCGGATAGTATACATGATAAACAGAAATGTACTTTAGTTACATTGCTTGACAGACTGTACTGCAGCAGCAGTAGAAACTTTTTATTTGCTTATTATGACTGTAGCTATAGTTTGATAACAGCTTGTTTTTGATATACAAGGTCTGAAATCTTATCCTCTATCCTTTCTGATACTTTGAAATATCCTAACAAATCAATAAGGTCTAGGAATTGCACCCACATCTTTTTCTTACCCTAAATATACAGTGATCAAGTTTCCATACTCATTCATTAGAATTTTACTTTCCTGCATCTATTTGTATAATCATTTATTTGAAGGTATACCATTTAAATCAATCATATGTAGTTAAACATTTAACATACTGTCATTATTATGATAAACACATAGGCTATAAAATTTGGATAGTTCTCGTAAAATCAGGATAAGATGTACCACACATATGCATACTTGTGTACCGAGCACCGTGCTACATACAGTATGGCATATGGATTGAGATGATGCTGGGGAGAAAATAGTTTGTTGAAGTGAAGTCTCATCCACTGTCAGATGAACAAAGGAAGCAGGACATCATGACTGATGAGAATCTTAACCTTGGGTTCACTCTGCAAAGCCAGGCAGGAGGAAGACCAGACCCCGAGGTCTCCACTGCCACACAAGCAGTGAAGACAGATGCACAGAAACTGAGATGGACATTTCAAGTTCTGATGTGATAATGCGTAATATATAAGAGCATGCTTGTGTGCATTTGTTTCTCAGTCACTCAGTTGTATCCGACTCTTTGTAACCCCATGGACGATTGCCTGCCAGGCTCCTCTGTCCATGGAATTTCCCAGGCAAGAACACTGGAGTAGGTTGCCATTTCCCTCTTCATGGGATCTTCCTGACCCAGGGATCAAACCTGTGTCTCCTGCATTGGCAGGCAGATTCCTTACCACTGAGTCACCGGGGAAGCCCCTAATAAGAGCACTGACTACATTTGCTCATTTCCTGATAGCATGCAGTGTAGATAGGAAATTATATTTATTTTTAGGTGCTTTAGGAAGCTACAGTTAAAATCTATCTCCTTTTTTTTACAG
Seq C2 exon
GATTAAAGTCAGAAGGCCTTTATAGAGTCTCCGGGTTCACAGAACACATTGAAGATGTCAAAATGGCATTTGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020931:ENSBTAT00000027880:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(37.7=33.9),PF087466=zf-RING-like=PD(48.7=32.2),PF0062022=RhoGAP=PU(9.0=23.7)
A:
NA
C2:
PF0062022=RhoGAP=FE(16.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]