MmuINT0036122 @ mm10
Intron Retention
Gene
ENSMUSG00000004633 | Chn2
Description
chimerin 2 [Source:MGI Symbol;Acc:MGI:1917243]
Coordinates
chr6:54290267-54293115:+
Coord C1 exon
chr6:54290267-54290440
Coord A exon
chr6:54290441-54293037
Coord C2 exon
chr6:54293038-54293115
Length
2597 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
3' ss Seq
ACCCCACCCCTGACCTGCAGGAT
3' ss Score
8.74
Exon sequences
Seq C1 exon
ATTGTGGGTTAAACGTACACAAACAGTGCTCCAAGCACGTCCCCAATGACTGCCAGCCAGATCTCAAGAGGATCAAGAAAGTGTACTGCTGTGACCTCACCACGCTTGTCAAAGCTCACAACACTCAGAGACCCATGGTGGTGGACATATGTATTCGGGAAATTGAAGCAAGAG
Seq A exon
GTTTGGAAAATACTCTCTAACTGTTGTATTTATGTTATATTAATTATATTACATGTACTGTGTTATATTGTATTGATTTAGCTTTTTATTTTTTAATTGAGGAAACTGACTCATTTTAGTGCCCCCTTTAGGACAATGGCTTGCATACACACAAAAAGCACTACAGATAAATACGCTATAATAGCCAAATAATCAGGTCGAATTCCACTCCTGTATAAGCCATGCATGTCCACGTTCTGCAAATGTTTACTGAACGTTTACTACAGGCTAGAGAGCAATGATCTGAAAGTCTCTGTTCTCAACCTCAAGAATCCATACTGGAGACTCATTCGGGGAGTCAGGGAGACAAGTAAACACACGACTGTACCCTAAAGCTCCACAGAGGAAGGGGTCTTCAGCTTGTTTGAGGACCTCCAACAAGGGACAAGGGACTGGTCCCCTTTTGAATATGCTTCCTCCCGTGTGCCCCAGCAGCTGGTGAGGAGATCAGACCAAGTCTATCCGCATGAAGGACCTGGTACATGCCAGTATGCAGGGAGCATCGTGTGCTCTTTCTTTCTACTTCATTGGCATGGCCAAGGGTTTTAGTTACTGTTGTAGAAAACATTTAACCTCAAATCAGGGGTTTCTACTCTGCCTTTGCTCATTCAGTTCCCAGATAAGACACACAACTTTTATATTTATAATAAGCCTTATGCACTAGAGCTGGGCAGATATTAACCCTCTGTTATTGGTATCTATTTCCCTATCAAGAACCCTGAGTTATAACTGGCTATATTCTTCACAAACTGCTCTTAACCCTAAGTTTTTTCATAACTCACCTACCCCATGGTGACTTCTCCCCTCTCCACTACCTTCTCCCTCTCTCCTTGTGGTCCTCCTCTGACCCCAATCCTGGGAACCCCAACCCCACCTCTATCTTCTGCCTAGCTATAGGCATTTTCATTCCCCAATCAGGGATAATTTGGGGAGCAAGATTACATAACATCACTTGAGTACATGGGGATTCTATCATCTCTGGGGGGCAGCTAGGCTTGGGGATGGACTAATATTTAACATTACAATACATAGCAAAAACAAAAACAAAACCCTAAACCTCAACAAGTTACTTTTGTTGTTGCTTTACCAAAAAGCCAGACAACAGCCCCTGGAGGAAGGGAGCATTTATTTTGGCTCATGTGTTGGGAGTATAGTTCATCATAGGAAGCTTCGGTCAGAGAAATGTAGCCTGAAGGGTCACACTGTGTCTACAGTAAACAAAACAAACACCCCAGAGAGGTGACTGCTAGTACTGTGGATACTGTTCTCAAACCAAATGTTTCATTAGAGTAAAGGGATAGGAGAACTGTTAACGGAGGATGGCTGGCAGCCTCTACTGCTCTGCCAACTCTAGCCCATAGCTTGGGACTGCCTCTAGATGTCCTTTTCCCTCTATAAAGGAGCTGTGTGCCTACAGCTGTGTATTCCTGTAAACTGCTACGACCTCCCCCTCTGGCAATGCCTGTCTCATTCTTGCAGAGATGAGCTTGCATGACCGCCTGGAACAGAGTGGCACACTGGGTTTATCTTGTGGGTTGCTTCCAGTTGATCAAGAGTCACTACTATCTAAGCATGCCTATCTGAGAGCAGAGATGAGATTAACTAAGGATGTCTGCCATGAGACAGTAGAGCCTCGTCAGATTGAGCATGCCTACCACAGTCCCAGGGAAGAGCAGAGGCACCCATCCCTTGTATTCAGTACAAGGTTACTGGCAGATATTACCATAAGAGTAGAAATTTAAAGCCGGGAAGTGTGTTAGTTATCCAAAGTTTGACAGAATAGTTGTTTACTTGTTTTTGCGTAGCTCAGTTTTGACACCAGTTCAGTTTTGGCATTTGGAATCTGAAACCTGATCCTCTAATCCTGTTGCTGTTTTCATCTTACATGACACCCACTGGGTGAAGGAGAGCGAACTAGGTTCAACATGTTTCCAACACATCAGTATAGTTTGACAGACAGACATCCTCTTTCTTACCTTGATTAAGTTTTCAGACCATTAAATAGAATTGAACTTGACTGCATCTGTTTATATAATTAGCTATCTAAAAGCAGAATAAATCAAGCACACTTAGCATATTATCTTACCTATGATTTAACATGAAATGTTATAAATTTTAGATTTCTCCAATGAAGTCAGGATAATCTGTGCCACACACATTCAAGGGTGGCTATGTCCAATACACCTGAATAAGTTGCCAGGCAGAAAACTGGGCTCTGGCTGCATCAGTAAAGTAGGTGTGCAGAAGTGATGAACAGAGGTAGTTAGAGAGAACCTCAGATCTCAACTCACTTTGTAGCCAGCCAGGAGGAAGAGCTGGTCTCCACGAGATGCCCATCTCCACCAATCAGATGGAGACAGGCACCTGTGGAGATTGGCAGGAAGATTCCAGGGTCTTGGACTGCAGGGCGGGAGGCATCAATCAGATCACTCGGTGCAGCTATAACATGAGAGTGACTTTATTAGATACCATGGGAAAGCAAAGTTGAAGTCTCCTCCTCTCTCTTGCCGCCCCCACCCCCACCCCCACCCAACCCCCACCCCACCCCTGACCTGCAG
Seq C2 exon
GATTAAAGTCAGAAGGGCTTTACAGAGTCTCTGGATTCACAGAACACATTGAAGATGTCAAGATGGCGTTTGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004633:ENSMUST00000046856:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(37.7=33.9),PF087466=zf-RING-like=PD(50.0=33.9),PF0062022=RhoGAP=PU(11.1=23.7)
A:
NA
C2:
PF0062022=RhoGAP=FE(57.8=100),PF0062022=RhoGAP=PU(1.4=3.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types