DreINT0046639 @ danRer10
Intron Retention
Gene
ENSDARG00000011845 | chn2
Description
chimerin 2 [Source:ZFIN;Acc:ZDB-GENE-091020-5]
Coordinates
chr16:20519338-20522400:-
Coord C1 exon
chr16:20522227-20522400
Coord A exon
chr16:20519416-20522226
Coord C2 exon
chr16:20519338-20519415
Length
2811 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TACTGTTCTTCTTCTTCCAGGTT
3' ss Score
10.85
Exon sequences
Seq C1 exon
ACTGTGGACTCAATGTGCACAAGCAGTGCTCCAAACTGGTGCCCAGTGACTGTCAGCCAGACCTGCGCAGGATCAAGAAGGTTTTCAGCTGCGATCTCACCACACTGGTCAAAGCACACAACACGCCGAGGCCCATGGTTCTGGACATGTGTATCAGAGAGATCGAACACAGAG
Seq A exon
GTACTGAAATGCTGTTCTACGCTAACATTTCAACCTTTTTTCAGTCACCGTGGCCTTCAGAGCAACACTTAATCACTGTCTGTCAGCATCTAAACAGCTGCGCTTTACTCTGCTGTCAAATATCAAGACATGCAAAAGAAGCTTTAGATACCTTAGCTTAAAAAAATTAAATTCTGTCACAATTTTCTCGCTTTTTATTGTTTTAAACCTTTATGAGCTTATGAGGAACTTTTTTCTGTTGAACACTTAAGAAGACATTTTGAAAAATGTTAAAGCCTGCAACCACTGACATACATTGTATTTGTTTTGTTTCTACTATGGAAGTCAATGGTTACAGGTTTTAAACTGTATTGAAGATATATTTTGTGTTTAACAGAGGAAAGAAACTCAGAAATAAAGGGTTGGATCTACTTGAAAGTGCGTAAATAGTGAGTAACCTTTCATCTTTGGGTGAACTATCCATTTAACTACTTTAAAGAGCAGAGAGGAAAGCTTACATTCTGCATATTCTGACTTCAAGAGAGCATTCAGTTAATATATTTTAGCCATCAATCATTCTTACAGTTAAGGAAAGTAACAGCACTGAACATAACAAAGGAAGAAATTACTTGCATTTTTGTTTATTTTTTTAAGCAAGATCTGTTGAATATTTTCTCCAGTCATCTATAGTTCACTGTAAAAAAAAAATCTGGGTTCCACACAATCGATTTGTGTTAGGACAACATGAAACAATTAAGTTAACATATTAGTTTCTACTAATGTACTAGGATTGAAGATATATCATTTAAGTTCGTCACCTAAGAATAAAAAGGTTCTATCTGATATTCCTGTCAAAATTGAGTTTTTGACATTTTTATTAAATGACCTCTTATTTACAGTTGTTGTTTACATTTTAAGACTTTTTATTTAAAAAAAGGAATGTTAGACACATACTGTTTGCTATATGGAATGCAAAAACTTTTAAGCTCAATTTCTCAGATAAACCTTATAATTCCAAGGTGATGAAATGTAATGTTTTTACAAAACAATGTTTTTTGAGACCATAATATTGGAAAATATTTTATCTATTTATTTTGTTTTGATTATTGATTGACAGTACACTTGTTACAAACCACAAACTGTATGAGTTTCTTTTTTTCTGTTGAACAAAAAAAGATATATATATATATATATGGGGTGTAACGATTCAAAAATCACGGCTCAATATGATACAATGGTGTCATGGTTTGGTTCATTTTCGATACAGCAAAAAAAGAAAAAAGCCAGAGGATTTCTCTGATTTAATTTTTTAATGTATTAAACTAACATCATAAAAGTATCATCCTGTTTTTTTTTTTCTTTTACTTTAAACAGTGATAGAGCTCTACTTCCGGGGTTCTGCTTAGCAGCAAATAAAACAAAATCCTTCCTTATAATCAAAACCAAAAAGCTTCCTATAAAAAATAAATAGGTTATTGTAGCAGTTAAACAAATAAAAAGATTTAGTTTTTTATAGAAATCAGTTTTAATAAATTTTTAAGTATTTTTTTTTTTTTTTAGAAAGATGAGTGTCCACCTTTTCTTCAGACAGCACAGATCTGCTTGATTTGATTGTCACCTGCCATTTTAGTGAATTTGAAAGCAGGAATTATCTGACTGAAATGGGCTTATGAAGGAATAATGTAACGGGGCTCTATTACATTTAACATTTTCTTAAAACTTTTTTTTTTTTTTAAACATTTTCTTGAAACTTAAAATTTTCACTACCGATTAAGATCTCTCAGATGTTTTTTTTCCACCACTCTCTTGGTAGCGGTGATGGTGCGTGACGTATCTGAAGAGCGGTGGAAGCATCTGCATGTAATGTACCTGAGCAGCGGGAGTGAGTTGTGCCCAGCGTACCTGAAGAGCTGGGAGGGATGCGGTGGAGAGGGGTGTGCGACATATTTAAAGACCGGGGGAGACGCACGATTTCCAGAAGATTATCATTCGTTTGTGGGCATCCAGGAGTCTCCCGAAGCTCCTGATGTTTGGGATTACATTACCATTACTAGCCATTTTACGAGCTAGTGTAGCGCTTGTTTGGAGTAGTGTTTGGAGGTTGGCTCCTTTGTGTCAGGGGTCCTGGGTTGCTGGGGAAATGGGGGCGGAGCCAGCACAAGCAGCCAGGCTGACACAGAAGCCAGCAAGATTGCTAATGAGTGCATGTTTTAATAAAGTGATATTCTGAGTTCATGACAGTGGGGAAGGCAGCATGTTGTCTGCCACGTCATTTGGGATGCCATGTTGAGCGTTGTTGCACTGAAAACATTATATTTTGTACTTATTCCCTTTTATCTTTTTAGATGTTAGTCTGAATTCAATCGTCCGGTTTGTAATGCGTACCGAACCGAAAGTCTCGTACCGAACGGTTCAATACTAATTCGCGTATCGTTACACCCTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGTGTGTGTGTGTGTGTGTGTGTATTGAAGACTTTCTTTAAAGCAACTGCAGTTGCAGTCCAGACCATTCAGAATTTGTGAGGATCCCTGGTCTAAATTAAGTAAAGATAATCAGCAGATGATAGATGCACTGTGCTATGTGCAGATTATCCAATTTATCAAAGGAACAACCAGCAGATGAATTGATTATTCACTTAAAGTTGTTGGCTGCAGTCCTAGTTTGATCAATTTTAATTTACATGTCCACTTCCCCACCATTGACCGCATAGTTTATGTAAATTCATACTGTTCTTCTTCTTCCAG
Seq C2 exon
GTTTGAAATCAGAGGGTCTGTACAGAGTGTCAGGCTTCACAGAACACATAGAAGATGTCCGACTGTCCTTCGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011845:ENSDART00000139776:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(37.7=34.5),PF087466=zf-RING-like=PD(45.9=29.3),PF138311=PHD_2=PD(70.4=32.8),PF0062022=RhoGAP=PU(8.4=22.4)
A:
NA
C2:
PF0062022=RhoGAP=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]