GgaINT0099689 @ galGal3
Intron Retention
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44725491-44728451:-
Coord C1 exon
chr2:44728449-44728451
Coord A exon
chr2:44725655-44728448
Coord C2 exon
chr2:44725491-44725654
Length
2794 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CTTCTTCTTATACCTTTTAGGTG
3' ss Score
10.28
Exon sequences
Seq C1 exon
AGA
Seq A exon
GTAAGTTGGTTCAGTATTTGTTGGAAGCCTAACCTTATTTGCATGAATGTGCAATTAACCCTTTTTCTCTATTTTTCCTCCCCAACAAGTTCATGCAGTGTCAAGGCTTTTGCAATCATAAAATGCTGTATACAATTATGTAAACTGTGTGGCAAAGTTTTGAGATGTGCTTTATTTACTAATTAACTGACATTGTTTGGTTATGCATTCCTGCTTTGTATTGTGGTGGTTGGCACATCTGAAATAATTCACTTTAAAGGTAGATCAGTTACAATTATTTTCATATCTGTTTATTTTTCCACTATCAAATTATTAAGAACTTCAGCTTTAGGCGCTTGATAGAAGTTTGAAGTTGCATCTTAAAAATGGAGACTGCAGGAGTTGTAGTACCGACATACGTTGTTCAGAACGAAGGTGGCTGAGTTCCATTTTCCATTCCAAATTCATCCTTTACCTTAAATTCTCTTCCAGCTTTTTTTTTTTAAACCCTCATGCTTTGACTGAGACAAAAAGCCATGATATTTTTATATTTTTAATACCAGAAAATGATTAAACTTACACAACTTTTCTGCTGGCAGTCATGGGGTAGAGCTAAAATCAAAGCTTGAAAAGAAAACTGAGTCATCAGTTGTGAATGTTTATTTTTAACATCTAAAAAGTTGTCATGAAATTTTTAAAGTACTTTTGCCATAGTGATTCATAATTCACTTCATAATGATTTCACTTTAACCCGCTTTACTTGTTGAAAGTGTCATACGGGGTCTACATTATTCCATCAAGTAGTTTGTTGTAACCAGTTTGTTCAGCTTGCACATTTTAATGAAGTATTGTGTGTAGTGGTAAATGGAAACTTTAAGAAGCAGGTACAGTTTCTGAGTTCTGCTGTGCTAAATAATTTAATTTGAAAGATTTTAAATACAGTTGTAAGACTTCCACTGTAATCTTTAGAGTACCTTATTTTCTACCTCTTATTTTAGGAGGCTGTAAAATCCAAAGACAGTAACGTTAGAATACAGAAAGTACCATTTGGCTTGGTTTTGCTTAGCTTTTAAAACTGTGTCCATGATTAACCCTTCGTGTGTAGTGGTATATGGTTTCTGTTCAGGCAAAGAGAGAAGGCATTTACAATCACAAGTGTGAAAATTACTTCCCGCTTCTGGGAGGGCAATTCTTAAATGTCAGACTTGCATAAAAATTTAAGTGGATAGCAGTGGAGTTAGCAATATTTTTTTCTCATTTTCAACTTAATTTACCCCAAAAGGAAAGTTGTACTGTTTCATCCTGATTGGCTTTGCATTAAGTAGAGTTTGTATTATTTTGTTTCCAATGAAGATTTTTTGGTGTTCAGGGCATCTCTTCTTAGATTCTCCGGTCTTTATGTGGTCCTGAAATAATCTGATTACTTTTTACTTTCAATGTAAATGTTGAGACATTTTTTAACGTAACTCTATTGATTTATTGTATTGGTTTTCATTATATGAATTGACTTACCCTGGCTTGATGTATCATCATGAAAAGCTAGGAGATCTCTTCTCCTCAGTAGTGATCTGACCCCTCCATTCTTGGTCACTGTTGTGGATGTAAGCCCATTTCTGTGGTGTGGCGTCTACAGCCATGTGAGGTATCATTACTGCTTGGGTTCATCCACTCCTACAGCAGCAGAATTTGGCATCATCACAAGGCAGATAAGCTGCAGGAGGAGGTGGAGGAGGATGTGGTGTTACAGCCCATCCTCTGCAGCAGGTATTTCCAGCCTTGTACCCATGTCAGGTACATACTCAGAAGGCAGTGTGTGTCCAGAGCTCTTTGTATCATGACAACAACTTTGCAGCTGTACCCAGCTATTTGCTGGAGCAGGAGTGCAAGTCAGATGTGAAGGCAGCATTTTCAGCTCAAATACCCATTTTTGTTATCAGAGAAATGAGAAACCCATCAAGTACACTGAATTTATAGCACACACTCCTTAATATCATTGTGAGCTTAGGAAAAACATAAAATCGGTGAGAGATACTAAAAAGACTGTTCAGATGAAGTTGTGTATTTCTGATGTTCTTCTTCCTGATCTCCGTGGTAAAGTTATTATAAATACACTAATATGCATCACTTTCTAAAAACTGAATACTGTATTTTCAGCATTATTTGTTTAAAAGAACACAATGGATAATATGTTTTGGAATGCTAAAGTACTTAACAGCTGTCAATCCGAAACGTATTGTGGCTTTTTTTCCTGCTCTGGGGAACGATTCTGTGTTTAGATATCTGCAATAGCAGAAGAACCTTGTTCTGTTCCAGAAACGTTTTATGTAAAGAGTTGGCCAGCTTTCATGATCTTGCAGAACTTAGTAGTGGAGATATTTACAGTGAAGATTCTACTAAAGCACTGTAGATGGTTTTTTTGCTTTAGAGAGAGAATGTTTTTGTAGTCATAGAGGATATGACAAAGCTTAATGATAGAGCTTGAAATGGGAAGAAAAAAAAAAGTTTTACTTGAAAAAAATGAGATTGCGCCAGCCATCACAGTAAGCATTTCTTTTCTTGACAATACTGCATGGAATACCTAGTTTTCAAACTTCTGCAGAAGTCAGCTAATGCTTCCACTGTACTCTTGTATCAAAATCCAGTGAAAAAGCAAGACAGGTTCTTTTTATTTTTTTCCTGCTTGGCTGCAAAACACTGCCTATTTCTGCCTCTGATTCCCTTACTGCTGCTTCTTTGTTTGTAAGTTCAGCATATGTCAGTGTCATTTCCTCTTTTTCCCCATCCTACCCTCTTTCCTTCTTCTTATACCTTTTAG
Seq C2 exon
GTGTTCAGTATGTTTTTGGAGACACTGGTGGACTTCATCCAGGTCCATAAAGAAGATCTGCAGGACTGGCTGTTTGTACTGCTGACCCAGCTATTGAAGAAAATGGGTGCTGATTTGCTTGGGTCTGTACAAGCAAAAGTTCAGAAGGCACTTGATGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995:ENSGALT00000019569:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.164
Domain overlap (PFAM):
C1:
PF116403=TAN=FE(0.1=100)
A:
NA
C2:
PF116403=TAN=PD(19.5=27.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]