GgaINT0102633 @ galGal4
Intron Retention
Gene
ENSGALG00000007928 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17878709-17881371:-
Coord C1 exon
chr2:17881268-17881371
Coord A exon
chr2:17878803-17881267
Coord C2 exon
chr2:17878709-17878802
Length
2465 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ATTGTTTGGTTTGTTTCTAGTGC
3' ss Score
6.9
Exon sequences
Seq C1 exon
ACTTGCTATATCTGTGATGAACAAGGCAGAGAAAGTAAAGCAGCCACTGGTGCATGCATGACATGTAATAAACACGGATGTCGACAAGCTTTTCATGTAACATG
Seq A exon
GTAAGTAGATTTTATTAACATATTTGAAGAATTTTCCAGAGAATCTACTCTATACTATAAAATGAATAAATGCTTTAATTAGAATATTTTGGGGTGAAGAAATATAGTGAAGTGATTTCTGTGGAAATAATTTTATTAGAGTTTACCAACTGTATGGCAGTGGTATCATACACATCGCTGGGAGCTGTAGAAGTAGTCTGATGGTGCTCCTTCGTGTTAAGTGCTCTGTGCTCATGTGAGTAAGGTTTGGTGTTTCTCATCCTGCCTTCTTTTTTTCATATGTTTTATAGGATACAGGAATGGGAAGGAATTTGAATTGCTGACCTGGTGATTTGATGTTTGCTTTTGATAAATCAGTAGGAAAAAGTGTTGAAATATACATTAAGAATGCAGTAAAATGACTACTTCTGGTTTTCAAACATTTGGAGTAGTTCACCTCACTAGCATGTAAATGGTACACATCTATCCTGAACTATTTATTTGGGTTTCATCTGTAGCTGCTGGAGAAAAAACAGCCATATCTGTCTGATTCATTCCACTTTAAGCTATTGTGGTTGGCAAGCATTCAGGAGATGCTTGTCTCATTTTATGAGTTTCTAAAAGAGACTGTATTAGATGACAACAAATGTCAGCAAGTAAGATGAGGCAAAGGGATTTCCACCCCAGAATTTCTGGGGGATATTTACTCTTTCAACTTCATCTGAAGCTATTTTGTAATAGCAGATTTACACAGATTATCCAGGTATGTTAGCTGTAGATTTAGTCATCAGGTTTATGAGTGCCCCATTGTGCTTCATCATTTCTGTGTAGAAGCTCAGTCTAAGAAACAGTTTTGCACACCTACTTAAAAGTATTTTCTTCAGTGTAATCAAGTGTTACTTTGGATGTCTTGTTCAGATTAAGTACTGATTTCTTTGCAACTCTGCACATCCTCATTTGCAGAGGTGGGGGCCTCTCTGTTGTTGTGTGTTTTTTTTTTGTTTTTTTTTGTTTTGCCCTTTCAGTACTTAGTTATTTGAAGGGATGTTGAAGTCTTACTTCTTCATAACCGCCTAATTTTTCACTGGATGTAATCAATGTCAAGTTTGGTTTTATGGTGAAAACAGACTTTGCTCCTGGCATACTATCTTGAGAAATTGCATATGGACATGAAAAAAGTTATGCATCCAGTTGTTTTAAAGAAGAGTTCTTTTCATCTCTTGTCTCTTTCTTCCAAAATCTTGTTATCAGTGAGTTTAAAAAGAACATGGGAATCACATTCAAAATAAAAATATATACCATTTGTAATCTTGCCAGTTCTTAGAATTTTTGTTTCATTGTAAACAGATATGTACAAAAAAATGATATCCAACCAGAGAGTACTATATTGATGTAATATTGAGGATATTGAGAGACGTCTGTAATATTTATGAAGTGGAAGAAAAATGTGAAAACTACAGAAAATAGAGATCCAGATCAGGCTGTGTCAGTTCTGTGTTAACAAAACTAATGTCTAGAGAAAAAAGAGCTGGAGTCCATCTGGTTTTTTTTTTTGTGACAAGCTTAGAATGACAGATCTTATAGCTTATAGCTGGCACCTGCTGTAGGTGTGCATGTATTTAGTAGGCAGTATTTCTGGATTGCACAAGGATGTGATATGATATATAAATGAGGGGAAAGTGATTTTTAAAAACAGTGAAAATAAGCTGCCATGTATTTTGTTCTTTCATTTACATACCTCCTTGCATCACTTTGTGACATTGTATTATTATGCTAATGAAAATGATGTAGAAAATGAAACCAAATACTTGGTTTTTCAATATCTAAGTTGGTTTTGATACAGAAAATAAATCAACTTTACTAATGGTGAAAAGCAAATTTGATTTGAAAAATGTAGTTGAGTAAGGTAATATTAGCCCAGACAAAGTGACACTGTAAGTCATTTTCTTCTTTTAAAAGAAATTAACCTGCCACAGTCTTTTAAACCAATGAAATATAGTTAGATTTATTATGTCATTGAAGTTCTATTAAAAAAAAAAAAAAAGTAATTTTCTTGGCAGAGCAGAGAAGGATTTATGCAACTTCAGAAGAATTTCTTCTTTGGATCCACACTATAGTTTTGTTTAAAAACAAGGCAAAAATTGTTTCTGTCTATTCTGCCTATTCTTTCTGTACGTAATTTTGATTTCAGTTTGAGCTAATAATCATCACTAATTGCTTTATTTGTGAAAGTAACTCAAATTTTTCAAGCTATACATTTGTTTGAATGTCTTGTAGATCCAGGAGAAAGTCATCAGCTGTCAGTAACCAAAGGTTTTTCACTGGGTTGCCAGAGGTGGGTTAGGTGCTGGCACGCTGTTAGAAGTCACTTGTGTAGAAATCTCCTCTAATTAAATACAGATACAAGCATCCATACGTTATCAACTGTGTTATTTTGGTGCAAGTTGGTACTTGCTTGTCTTGAATATTGTTTGGTTTGTTTCTAG
Seq C2 exon
TGCACAGTTTGCAGGACTTCTTTGTGAAGAAGAAGGCAATGGTGCAGATAATGTCCAATACTGTGGCTACTGTAAATACCATTTTAGTAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928:ENSGALT00000012873:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]