HsaINT0103681 @ hg38
Intron Retention
Gene
ENSG00000078403 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr10:21612348-21614924:+
Coord C1 exon
chr10:21612348-21612451
Coord A exon
chr10:21612452-21614830
Coord C2 exon
chr10:21614831-21614924
Length
2379 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TACTTGGCTTTTATTTTCAGCGC
3' ss Score
7.71
Exon sequences
Seq C1 exon
ACTTGCTACATTTGTGATGAACAAGGAAGAGAAAGCAAAGCAGCCACTGGTGCTTGCATGACATGTAATAAACATGGATGTCGACAGGCTTTCCATGTAACATG
Seq A exon
GTAAGGATGTTTCCATTGTTGCACAGAACTGAACTTGGTAAATACCTTGTGTAACAATCATAAGTTAAAGACTTAGATACTCAAACATTAATTATGGTAAACTTTATTGGTATAGTTTCTATGTTCACATTTACTTATTTGTAATAAAGATAATTTTAATAACTGAATGTATTTACCAGAGTGATTTTGCAATAAGTGGACTCTGGTTCTGATGTTTTATTCTCTGTAAGCTTCAGTTTCGTCTTGTTTAAAATTTTGGTATTGATTACCTATCCTTCGATTTGTTATTATGATTAAATGAGCTAATCTAGGTAAGCTTAGTGCAGTGTCTGAATACAAGGATTCGGTGAATGATAGTACTTCCTTACCTTCTGTGTCTCAAGTGAGAAGTAGTGTAACCACTGTCATTCTCAATATTACAATGGCGACTTCACAAAAACTTATTTAAGATACTCTTTCATGCCGGGTGCAGTGGCCCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGGTCCAGACCAGCCTGGCCAACATGGCAAAACCGTGTCTCTACTAAAAACACAAAAATTAGCCAGGTGTGGTGGCACATGCCTGCAATCCTAGCTACTTGGAAAGCTGAGGCAAGAGAATCGCTTAAACCTGGGAGGTGGAGTTTGCAGTGAACCGAGATTGCGCCATTGAACTCCAGCCTGGCGACAAACCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGATATTCTTTCAGCAACAAAATTTCAAGGGCAAAAATTATTTACAACAATATATTTTACATAATAGGTAACAGTTCCAAATAAAAAGTTTGGGAATAATCTGTGCACTAATTTTAAGAATCAGTCTATGCTTCACTGCCAGTGTAAGTACATGCTCATTTCCTGAGTTTTTAGTGTGTAGTTATATGAAATCTGTTTTATACTACTATTGTGAAATGGAAAACGGTTTTTGACTTTTATAAATTCTCGTAATGACTGTACCAAATTTCTCAAAGATGAAAGTAGTTTTTGGGGTATGAGATCTGTATACTAATATAATTTTGGAATGTTAAAAGTGTGAAAGGTCAAATTGAAAAGATGGTGATTAGAAACTTCAGCGTTTTGTGTTTTTAAAAATGAATATGCTAGGCACTGTGGCTTACGCCTGTAATCCCCAGCACTTTGAGAGACAGAGGTGGGCAGATTGCCTGAGCTCAGGAGTTCAGAGCCACCCTGGGCAAGGTGGTAAAACCCCATCTCTACTACAAATATGAAGAAATTAGCCGGGCATGGTGAAGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGATGGGAGCATTGCTTGAGCCCCAGAAGGCCGAGGTTGCAGTGAGCTGAGATCATGCCACTGTACTCTGGCCTGGGTGACAGAATGAGGCTCCATCTAAAAAAAAAAACAAAAAACAAACAAAACGAATATTAGCTGGGTGCAGTGGCTATGCCTGTAATCCCAGCACTTTAGGAGGCCAAGGTGGGAGGATCGCTTGAGTTAAAGAGCAGTCTGGGCAACATAGCAAGACACCTCATCTCTACTAAAAATAAAAACAAAATTAGCCAGGTGTGATGGTGTACTCCTGTAGTCCCAGCTATTTGGGAGGCTGAGGTGGGAGGATTGCCTGAGCCCAGGAGGTTAAGGCTGCAGTGAGCTTTCATTGCACCACTGCACTCCAGCCTGGGTGACAGAACGAAACCCTGTTTTTTTTTTTCAAAAAAAAAAAAAAAAAAAGAATATTGTAACATTAGGTTTCATTTTCATTTCTTCCATTGCTTTTTACTGAAAAGCACAATTTATGTTTATCTCGCTTATTGTGCTGTGACTTAAAGCACTTAGAGTTGCAAATTTAGTCTTGAGTGAATGCATGTTTTCCTTGTAAGGTTATGTAATCTGCATCCATGGGCTAAATACCATCACTTCGGCCCTTTAGAGGCATGGCCTTTCCATTTGTACCTGTGACAGATTGAAAAAGTAAAATGAAGTGTTAACTGATGGGGTGGGATTGAGGGGGAAGAGAATGTATCTTAAACTTAATATCTATTTGGAGACATAAAACATGTGTACATCTTCATCCTAATATGAGATGTGTGAAGAGTTTGTTTTAAGCCATAAACATAACTTTAAAAAAAGATCAGTTGCAGGTTGGGGTGAAATACACTTGGTCACAGCTAGAATAAAGCTTTTTATTTTCTCATTTTTTTCTTAGGAGATGTTATTTTCTCAGAGCATGAATGATTGGAAGTAAATTTTATTTGCTTATATATACAGGTACTGTGATTTTAGTATATCAATAAATATACTTGGCTTTTATTTTCAG
Seq C2 exon
CGCTCAGTTTGCCGGACTGCTTTGTGAAGAAGAAGGTAATGGTGCCGATAATGTCCAATACTGTGGCTACTGTAAATACCATTTTAGTAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078403:ENST00000377072:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4),PF105004=SR-25=PU(30.7=71.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development