RnoINT0092932 @ rn6
Intron Retention
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84900262-84901793:+
Coord C1 exon
chr17:84900262-84900365
Coord A exon
chr17:84900366-84901699
Coord C2 exon
chr17:84901700-84901793
Length
1334 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
CCTTGGCGTTGATTTTGCAGTGC
3' ss Score
7.07
Exon sequences
Seq C1 exon
ACTTGCTACATATGTGATGAGCAAGGACGAGAGAGCAAAGCGGCCACTGGCGCCTGCATGACATGCAATAAACATGGATGTCGACAGGCCTTCCATGTAACATG
Seq A exon
GTATGTTTCCACCACAGTAACACTGGCAAGCACGTTCCAGAATATGACATTGAACATCTACCCACCTGTGTAGTGCTGCAGAGCATTTTTTGGAATAGGTTTTCTGTTCAGTGCTGAGGATCAACCGAGTACCTTGTGGAAATCGTTAAAGCGCTGACCCAGCCACATCCCAGCCCTCTTGATTGTTTTGACCAAAAAAGCATACGCTCTTGCTTACGGTGCTGTGATGCTGGAGCAATGAGAACGCCTGGTGGCAGAATCCTGTAACAACCTGCTACTGGGGAGTGAGGCAGGGAGATCGCCAAGTCACAAGGCTGCGTGGGCTGTAGAATGTTCAGAGCCACTTTGGACAAGCTCATGAGCGTGTGCTTTTAAAGCTGGTGAGGTGACTCAACAAGGAAAGGTCCTTGTGTACCAAGCTCAATGACCAGAGTTTAATCTCTGGACCCCACATCGTGGAAAGAAAGCCACCTCTACCAAGTTGTTCTCTGACATGACAAATGCAGGTCAGGGGTGTACCCCTCAAAAACACACTGAATGCATGAGTAAAGACAGTAGCAAATGAAAGGGGGTAGCAGTGTAGCTTAGGAACGTGCTCGTGTAGCCTTCAAGAACCCTAGACAACCCCCCCTCCCCCAGAAGGAGAGCACCGTGTGCATCTGTACTCCCTGCCGTGGTGCTGTTGCACACCTTCAGTGAGGCATGATCTTTACTTGCACCAATATTGATGTGAAAAGTGAAATTAATAATCGTGAAGAGAAAAGGGATTTAGCTGTGCCCCTCTTGCTGGGTTTATATCACTATTTCCTTTTTCTAATATTTTTAAAATTATAATTATCTTAATAAAACACCGTTCTGTTTTCATGGGCTCTCATTGTTACCCAGCCTGTTTCAAACTCCTGGGCTCAGCGCACCTGAGCACTGAACTGCAGGCGGGTGCTGTTCCTTATGTGCAGCTTCTAAAGCCACACAATTGCTACTTAGCGACATAAAACTTGATACATGTTTATTCGTGATAGAGATGAAAACTTATAAATATAACCATAATTTTAAAGAATGGTAAATTCATTGCAAGTGGAGGTGAGCTATCCTTGACTACAACTCCAGTAGAGCTTCTCTGTTTCCTTCCTTGTGTTAGGGAGGGAGCAGGGGCATGAGTAGCCCTCGCACATACTAATGAAGTAAGCAGGTTGCTTCCAACAGAGCTAGACCTGTAGCCCCCTTCTTACCTCATTTTCCTTTACGTGGTCTTACAGGTGTCAAAAAGTTAATTTTCTATGCTTAACTATGTCATGGCGTGAGTTGTGCTGACCACCTTGGCGTTGATTTTGCAG
Seq C2 exon
TGCTCAGTTTGCCGGGCTGCTTTGTGAAGAAGAAGGGAATGGCGCGGACAACGTCCAGTACTGTGGCTACTGTAAATACCACTTTAGTAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249:ENSRNOT00000034157:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCTACATATGTGATGAGCA
R:
CAGCTTACTAAAGTGGTATTTACAGT
Band lengths:
198-1532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]