GgaINT0103356 @ galGal3
Intron Retention
Gene
ENSGALG00000007647 | MYO3A
Description
NA
Coordinates
chr2:16242790-16247494:-
Coord C1 exon
chr2:16247347-16247494
Coord A exon
chr2:16242944-16247346
Coord C2 exon
chr2:16242790-16242943
Length
4403 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CCTTCTGTTGTTTGTTACAGAAT
3' ss Score
10.99
Exon sequences
Seq C1 exon
TGGAAGCGATGAGGGTTTGAACATTGGAATTCTTGATATCTTTGGCTTTGAGAATTTCAAGAAGAATTCTTTTGAACAACTCTGTATCAACATTGCCAATGAACAGATTCAGTTCTACTTCAATCAACACGTCTTTGCCTGGGAACAG
Seq A exon
GTATGTGTGTTGAATTTTGTGATTAAGCTTTAGAATTGCTGAACATATAAAAGCTTGTCTCAAGAAATGACATTGTTTCTTCTCCATAGGAGGTTGTAAATTGCAGATCCTAACGAATGTTTTCTGAGTATGTATTGTGTGAAGCACTGTTGGATTGCTATTTGCAAGTAAAATGCCTACATAAAATACATTAAACTTGAAATGTACAGTATCTAAGCAACATAACACAGTGATAATCATTCTGGTGCAAATGCAGTGTTGTTTTCCTGAGGAATAATGTAACGTATGGTTCTACAGTAAAAAAAAAAATAATAAATGAGTGGTAAAATAATTATCGAAATGCAGTGTTCATAATAACTTACTAATAAGCTTAATGAGCACTGAAATTCCATAAATAAATAAATGGAAATCTTGATCTTAATTTGTTCCTGTTCAGGAACTACCTCATCTAAGCTAAATAATGTTGGATTTAATCAAAATAATTTTATGTGAAACAGAGACTAGAAATGGAATTATAAAAGTTTATGAAATTGAAGAGGACTAAAAAAACCTCAGAGAAAGATCATCTCAACTTTATAAAGTTTCATGTGACTCATCTTTAAATCATTATTCAGTATTGTTATTTGAAGAAATTACATTGTCTGGGGAAAAAACAATAATTTCACTGGAAATAGATATATTCGGTATTGTCACTGTTTTCTTTTCTGTACCTGAATCTGAAAACTGATAACAGCATTGCTTTCCCTGGCGGTGCAACCTGCTAAAAATATAGCATCAGAAGTGATGGGTATAGTATGTTAGGATGTGGTCAAAAATCCTAAGCTTTGTTATTCAGGATGTTCCCCAGGCACACTAAGTTGCCCTTGTATAAATTACAAAGAGCAATCGCCCCAAGCCTTTTAGGAACTAGCAATCTCATTGAAATTGCCCAAGAAGAATGAATGAATAATGTCATAATGTCTTACATAACATTTATGGAGTGACATAAATGGCCCCAAAACTGGCGTGGACACAGAATAGACAAACAAAAACACAATGGATTGTAGCACTCCCATCTAAGAAAAATTGACCTTAGTGATCATTTATTATTTTTTTTTAGTCTTGTTGCATTGGTACAGTAAATAAGAGAAGCCTGGGTAGGGTGTAAGGAGGAATTGCCTCAAGTTTTCTTAAGGAAGATTTTTTTTGTCCCATGAGTGACCACAGACTTATAATAACTCCCAGCTGTTTCTCCTTTAGTTTTTTGCACCAAGCAATGCTGAAAATTTTCTACAGGAATGAAATTTGTGAAGACAATTGTGCAGTACTGAGAAATCCTTTTTATTGAATGTTTTCTGTAGCATTTAGTGTCACTGTAGTACCCCTAATGTGATTTTAGTGGTTTTTGAGTATTCTTTTCCATCTTACTGGTATATATGAGAGTTGCTCCAAAAATAATACCTCCTTTTTCATTATGCTGCCCATCCTGTCCCTCAAGGTGTTTCTCTCACATGTAAGGTAGCAGCACTGATGTGAGATAATTCTTTGCTAGCTCCAAGTTCTGCAGGTAACTTTGTCCAGAAAGACAACTTTCCCATTTCTTTCTCACTTGTGATTCTTCTATAAAAAGTAAACAGTGTAATGTTTCCTATATAATACCTTCGATATTTTGGAAAGTGGTAAATTTATTGCCACTTAGAAGGATACTACTTTTTGCATTTTATAAGTATGCAGTGTTTATTTTACATTTATGTAGCAAATTGATCTTCTACTCTAAGGTGGAAATGTTCATCTCGAATAACTCCCTGATGTTGCTGTTTAAACCAAAGCATCATCATGCCACATTCTCAGAAAAAAATGTCGTTGCATTTTTATTAAGCATGAAGATAATTTTCTAATGCATTTAATAATTCTTTTGTTGGTAAATGAAACCAGACTACACAAGGTAATAATACCTAGTTTTGATCACAGAAGAAACGCCATAAAATACTGAGATGAGATTGGAAGCCAAGTATAAGTGCAACTCAGTCATTCCTTTTGACATCCCATCTATAGGAGTACTGTCTAGTGGATTATGCTTTAGAATTTCAATGAGCAGCTGATATTTGAAGGGGCCTTCTAGCTATAAAATACTATGGGAGATTACAACATCCTGTAGCTGATTCAGCTTATTAATTCAAATAAGATCTATTTAATTACAATTTCATGATGTACATCGTAAAAGCTTTTCTCCTTGCTGTTTGTATCATAATAATATGGTTGAGGACCAGCAATTGCATAAGAAAATGTAATACAGTATCTCTTAATTCCAAGCCATCTGTCACACCAGTGCCTAGAAGGCTTGGTTATCAGCCATCCTCCAGGAGCTCATGGGAAGTGATGAAGTGAACTTGCTTCACATCCTACTCAGCAGACAGTAGCATTACAGAAGCTGTCAGCACTAACATCCCATTCAGTTTTTAGTATACAAGTGCTAAATACTGAGGGGTCAGATACACTGAATGCTTTGAAGGTCAGGCATTTTTTGTTGGCAGTGCAGGGAGGGGGAGCAGATGTTGCCATTATGGTGGAGCGAAACTACTATTACAGAGTTCCTTTTCTATCAGCTTTCTTAACCACCCTCTCTCACAAACATTTCAAGTAGGGAAAAGTTAATCATTAGATGTGTTGTCTCTGAGATCTTCTTTGAGGATGTCTGAGCATCACCAAAACACTTTTCTGATATTTTCATCCAAGGTAATGTCTTCCACAGTATCTTCCCTTTTCCCCCTTGGTAAAAGTAGTCTTGGTAACCCTGAGCAGTAACAGCTGGTTTCATGAGCATGACAGCTGTGTGTCAGTACAGCCATAGCCCTTGGTTAAGTTGCCCCTACCCTGGTGTAATCTTTGGGAGATAACTCAGAGTCATTCCCTTCCTGCCACTAGCTCCTACATGTATATAATTAACTTCATGCCTGTATCAGTGACACATTTATTACTGTCCTGTCTTCTTGTGCTACTCAGGTCATTGATTAAAATGAAAAGCAAAGCTCCACCTGTCCACTGCTCCAGGGCAGGTGAGGTTGAAGTTAGTATTATGTACCTGATGGACAGAGCCCATGTGGGACTTTAGAAGAGATTACTCCTTACACCTTCACATGGGTGTATAGACCCCACCATAACCTATCCTTGGAGTTAAGAGTGTCCTGAGAAATGAGATCAGACTGGATAGTAGAGAAGTGTAGTTGTGTATTGTCTTCTTTCAAATGGATCAGCAGATATATTTATTTTGGTCAGTATTTCCAAGACAGTGTTAGTGATTTTTTTTATTTTTATTTTTTTATTTTTTTGTCATTTTGCAGTTTCTCTCTTGCTTAGAGGGATGAAGTCTAATAATGTGTGCTTTCCTGTTGCATATGGCAGTTAATTGTTATTTGAAATCCTCACCGTGTTGCTTTCTTCACTCACCCTGACTGTCATTCAAACTCAAGTGAATGACACAAAAGGAAAGGTTTTGGGGTTAGAGGTCTTTGAACTCATTAATATTAGCCATCATTCATGTTTATGACACTCAATTTACAGTGAATTCAGGGTAGCCCAACTGTGACATTACATCATAAATTAATATAACATTTCCATAAAGTCCTATTATTTGGAAGAGAAATTATGTTTAGAGTTGCTCAGAAGGCTTAATTATGTGTTTCATAGTGTATGGAGTAGTTTGCATGGCTCTGAAGGCAGCCCTGGTATATATGGGAGCTCTGTGCTCCCTTATATACTGCATTATGTAATGCAGACAAAAATAATGGAGGGGTGGCAGTCCCTAGAGCATCTTTCTCTTGGTAAATCTATGCCTGTCCTCTGCCATGCTGAAGAATTAAAGAAGGTCATTCTTGTATTGGCCAGCTATAATTTACATAATCTGGGGGAAAAATCATTGCAGCACCCTGTGGATACAGCTTTTGTTCCTGGGTTATACTCACTCTTGTGGAAAGTTAAGGATATCCGTTGTCTTCAGCAAAGAAGAAAGAATCAGCTCCTTTAGTGTTTTTTAATAATTCTTAATACTTTTCTGTCATTTCTTAAAAGGAACCAAAAAAAAGTAGAGGCCAACCTGAGACAATTTATTTATGTAATGTTTAGATTGTGTGTGCGCCATTCTTCCCAATGTGAGAGCTTTTCCTGATGTTTAAAGATGGGAATCAAACAGTTGGGGCATCTCAGATCTCCAGTCACTTTTGCAGAAATGCCATAGGAATCACTTAAATATCCAACGGCAAATTAAAATCTGTAGCTCGGCAGTGTGATACATCCATTCATGTCTTTAGCATCTCAGCATACTTTTTCCATGTAGTTTTAGTTTCCTACAATTGGCAGTTCATCAATTATTTTCTGAAGTGGTTCTGTATAGATATATATAATGTGCCTTCTGTTGTTTGTTACAG
Seq C2 exon
AATGAGTACCTATACGAAGGTGTTGATGCGAGAGTTATAGAATATGAGGACAACAGGCCTCTCTTAGATATGTTCTTGCAGAAACCAATGGGCTTATTATCCCTGCTTGATGAAGAAAGTCGATTCCCACAAGCAACAGATCAGACACTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647:ENSGALT00000012375:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]