GgaINT0108167 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P0H2]
Coordinates
chr1:112119-112770:-
Coord C1 exon
chr1:112505-112770
Coord A exon
chr1:112277-112504
Coord C2 exon
chr1:112119-112276
Length
228 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
ATCCTGCTTTGTGCTCACAGCTC
3' ss Score
8.42
Exon sequences
Seq C1 exon
CCCCGACACGCCGTGGCACGTGGTGATCGGTGGCCACGATCTGAAACGCCTGGGCCCCGAAGCTGTCGTGCGCAACGTGATACGGATAATCCCCCACGAATACTATCACAGAAACAACATGGCCAATGACATCGCGCTGCTTGAGCTGGACCAACCTGTCCAGTGCAGCTACTACATCCAGCTCGCCTGCGTGCCCGATGCCTCGCTGCGAGTGTCAGAGCTCACAGACTGCTATGTCAGTGGCTGGGGACACATGGGGCTGAGAT
Seq A exon
GTGAGTACCCGAAATGCATGGGTGTCCTGAGTTGAAGCTTGGCACGCTGCTGAGATGGGTCTGAAACCCAGTGACACCATGGGGACGTATCCATAGAGAGGGGTGGGTCTCACCCATTTCCCAAAGCAGGGAAACGTCGGTGCATCTCAAGACGTAGGGAAGGGGTTCACCCACCAACAGGGTAACAGGCGAGGAGCTGATGGTGCCAATCCTGCTTTGTGCTCACAG
Seq C2 exon
CTCTACAGGAATATGTCGAACCATACCGTGTCCTGCAGGAGGCCAAGGTCCAGCTCATTGACCTCAACATCTGCAACAGCAGCAACTGGTATGCTGGGGCTGTCCATATCCACAACGTGTGTGCTGGTTACCCGCAGGGCGGCATCGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023986:ENSGALT00000040436:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGTGGCCACGATCTGAAA
R:
GGTCAATGAGCTGGACCTTGG
Band lengths:
304-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]