GgaINT0108935 @ galGal3
Intron Retention
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59608466-59613049:+
Coord C1 exon
chr1:59608466-59608531
Coord A exon
chr1:59608532-59612977
Coord C2 exon
chr1:59612978-59613049
Length
4446 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTTCTTTTGCTTATTGTAGGGC
3' ss Score
9.84
Exon sequences
Seq C1 exon
AACTTTGTCCGACATCACTGGGTACACAGACGGAGGCAGGAGGGGAAATGTAAGCAGTGTGGAAAG
Seq A exon
GTAAGATTGCCTGTGCTTCACAAGTACAAACTCGGGTACACAGGCATTCAGGGTAGTCAGTAGCTCCTTCCAGTGATGGGATTGTTTCTTTGCTAAACGCTTAACCTCTTTTAAGTAGAAAGTGACTAAACTGAGTGGTAGCACCTCTGACTCACACATGGGAATAGAAAAGGCGGTTGCATCCATGCAAGAATGAGCCTGTCACATGTCCTGGGCTGTTGCACTGCACTGGCCAATTAAAAGGGCAAGGAGGAAGGCTCCTTGATCTTTTTTTTCTTGGTTAAGCCAACCCCGTGCCAATGTTGTGCTCTTGTAGTGATATCCTCTGCACCAACATTGTGATTACTTTCTGTTTTTTTCTGACTTCTAGAAAAGGAAAGGCTGTTGCTTTCTTTCTGCACTTTGTAAGACTGCTTCATATTCACTATCTGTGTGGCAAAATAAAAGCTTGTTTCTAAAAAGCTTTAAAAAGGAGTGTAACCTGAAGATTGGTCTTCTGAAAGATTATGAATCCTTGAAATTTGGTCTAGTGGTTGGTGACCCTGCCCATGGCAGTGGGGTTGAAACTAGGTAATCATTATGGTCCTTTTCAACCCAGGCCATTCTATGATTCTATAATTCTATGATTCTATGAAATAAATTAACACTGGGATTTAATTTCCTTACTCTAGAACTACATTCTGTCCTCTCTTAACAGCAACTAATAGGACTGTGTTTCGTCTCCATGGCATGGCACTTTAGTTAGAAGAAATCACATTTTAGATGGATGCTGATGTAGGTCATCAAGTGCAGCAAGGCATGGCATACAAACATGATGCTCTTTTTTAACAAGTGGCATGCAAATAGTGCAAGGAGGCACTTCACAGGTAGCATTCTTATGGTACACCTTCTTTGCTACTTTGGATCACCCTCCAGGAAAGTATTTCTGGACTAAATACTATGTGAAGAACCACCTTCTTGCTCATCTGTTATCTTGTAATGCTCCATAGCTCTCATGTTGGAAGAGGTGGTAAATAATGGCTCCCAAGACACGTTCTCTATGCCATTCGTTATGTTCAATATTTCTCTTGCGCTTCTGCTCATTTATTTCACTTGCAACCTGAAAAAAAATCCAGTTTGCAAGCTTTCAGCTGTTATTATCTTTGTTACCTGATATCTTCAGAGAAATTGGGGTTTTTTAAAAATATTTTTTTGTTTGCATAATTTATTATGAGAATAATCAGACCATGTGGCCCAACATGCAGTCCATGAGTGTGTGTGGTAATATAAGCTTAAGGATGAATGCAGATTTACCCTTTGTTCCTAAACTAATAATTACTAGCTCCTAGTAGTTTAGGGATTTTCTGAGGCTGAATGCATCTGTACTATCATACTGAAAATACTTTTAATTTGTTTTTACTTTCCGTGATGTCCAAAGCAATGTGTCCACCAAATTCACAGTGTGTAGCTGCAGGATTGATCTCTTTCTGTTAGTAGTGCCTTTAAAGGCCTGTGGATGGACGCAGGGCTTTGTTTTCATTGTATGTAAGTCACCAGCTAAGTGCTTCTGTTACTGTTTGTATTGGAGTTGTAGTAGTATCCATCTCTCATACAGTAGTGTTACACTGGAAAGTGTCTGAGAGCCTTAGAAATGGAATAAACACCTTTGTAATTTTTTTTCATGACAAATGACTTCTCCCCCTAACACTGATGTGAAAATGCTCTTTAATGGTAAATAGGTTTAAGGATACAACCAAAACATGCCAGAGCTAGTGATCGCTCTGTGCTGTACATGTGAGTGCCTTCATTAATGAGGGATTTGATCCCAATTATTTTGGCAGATTGCAATCACCAGTGCAAGCTGGAGATTCAGGTGCCCTTTTCCTCCAAACGTGTTCTCTCTGTTATGCATGACTGTACTTCCGCAGGAGCAGTTCACAGCATGGAATTTCATGTGTTGCACAGCAACCTGATGCCAGTGAATCAGGGCTAATCAGGTACTCTTTGGCTGATATCCCCAGAAAAGTGAAATTACTTCTCCATCCCCACATTTCTGAATTTATACAGAAAGCTTCCTTACATAACCTGTGGACAAGGTAGGATAACTGAATTCTCATGTTTTTTCCCTGACTGAGGAAAGGAAGAAGAGAGAATTTCTGGTGAATTCTGGAGTCCCCCAGTGTTTCAACCCAATTGTCTACATAAAATCTCCCTGTGACCTGCAACCCATCACTGTATTTCATCATTCCCTTTGAAAGTTAGCTTTCAAACAATCACTGTCTTATCCCAAACACGTATCCTTAGGAAGAATTAGCTCACATCTATAAAGCAATTTGAGGAATTATTGGTTCTTATCATTAATATGTTTTTACTGCTCTTACGGCTCCCTGAAAGCCAACTGGCTTACTGAATAAATAAGAAGTGATCCATCCAGAACCAGACAAGCTGCTCAGTCCACATGTTTGAAATACACCACTAGTGGGCTGTGGAATTAATGTACTGAATTTTAGGTTTCATTAGTGGAGGTCTGGGGGGAGAAAAATTTCTCCCATGCTTCTTAGAAACCAGAACAAAAAAACATTTAATGCCAACGAGAGGCTGATTTATTCTTTTACAGTACACTGGGACAAAGTGTAGGATTTGTGAGAATCTTTAAGAGATCTCAGTCCAAGTAAATGAAAACAGAGTTCTTTGTCCAGTATCAGGTTTCCCTTTCAGCACTTGTCATATATAGTATCATGTTTGCTCTTGTGCCCACACAGGATATCAGATTGGATCTGCCCAGGCAGAAGCAGCAGACTGGCTTGTCTTTGTGAACCCATTTGGCCATGTTCTGTTACTAAACTTGGATATGCTAAATCATCCCCATTATGAAGAACCAGCTCTTTGAGATTCTCTTTATATATAACCTTAGATATCAGGGGAAAGATCAAAAAAACCACAGAGGTGGCACAGTCTGAGAGGCATGGCCAAAGTTGGTGGTGTGGTCAAATACATGCTGAGGACGCGAGGTAGCTGCAATGTGTATTTCTGCACAGCAGGTAGACAGGGAGAGCCTGCTCCCCATCAGTGTATTGATAGGACTGTAGCTCAATCAGCTCATGAGACCACTGCAGCTCAGGGTGGCTTTTGATTGTTTAATTATCCTTCTTGCAGTATTTTTCATTCACATTGCCATGCACGCTACAGTTATCCTAATACTTAGGTCATTCTGAAAGTAATGCCTCCTATTTATTTCCATGGGAACTGCAACAGACATGAAGAACACAGTAATACTGTTTAATAAGGCAAATTCTCTGCTACAAAACAATATTTTGCAATACAGTCACCTCCATTAGCTGTGCATTTTCACCAGAGCCTGCATGCTGCGCTCATTAAAAATCTGTACCAGCAGAGGTGACCCACTGTAACTGTCACTGCTGCTGTAATGCACCACCTACTGCCTCGCTGTGTTCACATCCACTGTTTGGTCTCCATAAATGCTCATCAAGCACTGATGAATGTCAGTGGGTGCCAGTTTTTTCCATACTGATGAATGTCAGTGGGTGCCAGTTTTTTCCATACAGAGGAATTCAGTGACACACTTTTGCTTCATATGTACTTCCATGTCAGACGCCATTTTGTCAGACTGCCCTTCTTCTGCCTGCTGTATGGTGCATGGCAGCAAAAAGTAATGGAATATTGTCAGGAAGGTTCATCCTCTACTGCCATTCCACCAGCATCCACCTCTGATGTTGTAGACCAACATCATAAGAGAGGAGGCATCACTTTTGGGGCAGCCCTTGTAGTCTCATTTTTCCTGTGTGTGTGTTTCCTGTCCTCTTTAAAACTATAGAAGTATATATTTTTATATTTGATTTGAATCAACAAAAACAACCCAAGATTGTCTGTTTTTTTTTTTGTGTGTGTTGTTTTGTTTTTTGAAATGTACTAAAAAGATTTTGATCTGAGTCAGCTTAATAAGACAATAAACTTAATTTCCTAAATGGAAGATTTCCAGACAGACATTATAGTTGATTCTACTCTATGCTAGAAATAAATAAATAATGTTAATAAACCCAATTCTTATTTATATTTAAAGTGAAAAAGACTGCAGTGAAAAATGTTCAATTCAGCATAAAATCTGACTGTCACAACTGTAGAAAGCCATTAAAATATCAGTTTTGTCTCTTTCTTCATCTCCCTTTTCTTTTCTAACTACAAAATCTTATGAAAAGCACAGAAATTTGGGGAAATATCTTTAAAGAGTGTGTAATAACATGCTGTAGCTGAAAAGTCTTCCCTATCAATCCTGTCACTATTTTATCCTCCCAAAACATATTTGGAATCCTAGAGCTTTGAGGCTGAACCAATGTATGTGACTCCACTGAACTGATTTAGCCTAGCACCATTACCTGACAAGAATTAAAGACATAAATTTTCCTGTAGTCAGGGTGAATTTAACTCCTTTTCTTTTGCTTATTGTAG
Seq C2 exon
GGCTTTCAGCAGAAATTCTCCTTCCATAGTAAAGAGATTGTGGCCATCAGTTGTTCCTGGTGCAAGCTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890:ENSGALT00000021020:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=77.3)
A:
NA
C2:
PF0013017=C1_1=FE(38.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]