GgaINT0110822 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N855]
Coordinates
chr1:161054229-161055948:-
Coord C1 exon
chr1:161055730-161055948
Coord A exon
chr1:161054474-161055729
Coord C2 exon
chr1:161054229-161054473
Length
1256 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TATTTGTTTTTATCTTTGAGGTA
3' ss Score
2.36
Exon sequences
Seq C1 exon
CTCCAAAAGCAGGATATAGCCAAGGGGCAACTCAATATACCCAAGCCCAGCAAACACGACAAGTGACGGCTATAAAACCTGCAACCCCAAGTCCAGCAACAACTACTTTTTCTATATATCCAGTATCTTCTACTGTGCAGCCAGTAGCAGCTGCAGCTACTGTTGTTCCATCCTATACTCAAAGTGCAACATACAGTACAACAGGGGTTACTTACTCTG
Seq A exon
GTAAGAATTTTGCATATTATACTGCTGGGATCTTTGCAATTGTTATGGAAGATTAAATTATTTAAATACTCAAAATTTTAGCATTTTGTTTTCTGTTACATCATAGTCTACCGAAAAGTATCAACTAGCTACATCAAAATATTTTGCCAGTATAATGATTTATCTTTAAAAGAAGTTTGATGCTTAAATATGCCTATTTTGTTACATGAAAATATACAAGGTATTGACATGGCTATGTGCACAGTGTTTTGTGACTTACCATAAGGTTTGGAGAGAAAAGATGAGGAAATAAAAAAGATGAGGGGATACATCCACACAAATATAATTGAGAGAAATTGGAAGGGAGCATGATGCCATCGAACAGCAACTGTAGAGAAAGGGAAGAGCAATCCAATATAAAGCTTGTAAGCTTGGGTTGCGTTAACCCAAAATGGGAGAAGAACGGATGCTAAAAAAAAGAAACAACAAAACCTTTCCTTCAACTTTAGATTTATGGCTAGATGGTGATCAGCTGGTATATTATAGCTACACTGAACTTGTTTTGTTTGTTTCTGTTTAAAAATGGATTTTAAAGGGACTTCTTTGAAACAGAACCTGTTCAGAGGATTAAAAAGGTTGAACCAGTAGATGTAGAAAGTTTATGGGAAAACTGGCTCGAAGGAATTAAAGCCCAGTTTCCTTGTTTAATTCAATTTTGATACTAGAAATCAAGGAGCGCATACCTAAGATATGCTGCAAAGGTTTCAGTAGGCAAGCAGCTTTGCACTAAAACAATTTAAATCACTGAAGTAGAATATAATAGCACTAGCAGTTCTGTTTTTTGCATTCTTTTTTTTTTCCCCTTCTCTGCATAATCTCTGTCACCTTCTTCATTTTGAATATTGAACAGTAAGTCTGGTTTTAAAAGACTGTTTACTTCAACTGACCTTTGATAAACATTGTATTCTTGTTGAATATCTTACCAGACGAATCAATAATTTTCACATATTCTTTAGGGATCCTTTGATATATCCAACAACATAACTGTGCATCTGCAAAGACGTGCCTAAAATCAAATATATTCCTGATAAAAGTGGTAGGCTATGTATTTGTGTACTATGAAGCATCAAGAAAAGCAGACTGCATAACGAGATATCAATAAATTGTTTATTTCCTGCTCTGCCACTCCATCTCTATTATGCAGCATGCTTGCAATTAGTGTGTTATGTAATTGATACTTGATGTGCGGTGATGTAATATTTGTTTTTATCTTTGAG
Seq C2 exon
GTACTTCTTATTCTGGCTATGAAGCCGCAGTGTATTCAGCTGCATCATCCTATTACCAGCAGCAGCAGCAACAGAAACAGGCAGTGGCAGCTGCTGCTGCTGCTGCTGCAACAGCCGCTTGGACAGGGACCACCTTTACTAAAAAGGCACCATTCCAAAATAAGCAACTGAAACCAAAACAACCTCCCAAACCACCCCAGATCCACTATTGCGATGTTTGTAAGATCAGCTGTGCTGGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014545:ENSGALT00000023466:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=PU(52.0=15.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCCCAAGTCCAGCAACAA
R:
TCGCAATAGTGGATCTGGGGT
Band lengths:
352-1608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]