GgaINT0110836 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:165947155-165954014:-
Coord C1 exon
chr1:165953919-165954014
Coord A exon
chr1:165947267-165953918
Coord C2 exon
chr1:165947155-165947266
Length
6652 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTAATTATTGTTGTTACAGGCT
3' ss Score
7.02
Exon sequences
Seq C1 exon
GCTAGAGCTAATGGTCTGCAGTCCTGTGTGATTATCATACGTATTCTTCGTGACCTCTGTCAGCGTGTTCCAACTTGGTCTGATTTTCCAAGCTGG
Seq A exon
GTGAGTAGTATTCTTTTGAATGAGTCTTTTTAAAAGCACATGGTACTACAAGTAGGGCACTGGAAAGTGTTACTGCAGTTAAATGTAGATTTTTCAAGAGGTAGTATGTTTTTTTGTTTTTGTTTTTTGTTTTGTTTTTTAATTTAGAGGGAATGTAGAGTCCCTCTAAAAACTTAATTTTCTGAGGTTTAGTCATTTGAAGTTGGATTTTCTTTTTTCCAAAGGAATTTTCTTGTTCTTTTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGGGTAACATCCTGATTTTAGGTGCTTGTTTCTTTGCTTAAACTGTATTTAAAGAAATCTAATTTTTTTTCTGGTGGTTAGAAATTAAACTTCACTGAAACTGATTTAAAGTGATGTCAGCTGTGCCCAGATACCTCTGTGATAACAGAAAGGCTTCTTTAAAGAACAAATCATGGTAATTCTGCAATCATTAATATAACCCTTCTGTAAGATGAAATACCACAGGTTGCCCAGTGATGTGGTTGATGCCTCATCCCTGGAGACTTTCACAGTGAGGCTGAATAAGGCCCTGGGCAAACTGATCTAGCTGTAGATATCCCTGTTCATTGCAGGGAAGTTGGACTAGATGGCCTTCAGAGGCCCCTTCCAACTCTAAGGATTGTATGATTAGTCAGTGGATGTGTCAAAATTAGCATCGTAATCAGTGTCACTTAGAAACAGATATCGATATTGAACCCATTTACCATCTCATAATTCTTGCAGCTGAGCATTCTTGCAGCATTATTTTTTATTGCCTATTTTAAAAGATGCTCTCCAGGAGTGTAATTTATTCTTCAATTTGTGGACCTGACAAAATTTGTCTGAAATAAAATCTCTGAAAAGTGTGTATAGTATATAGATAAACTAGTTTGGTTCACAGACCAAATCCTGTTACGCTGTGCTGCTTCTCAATGTCAACTTTTCAATTTTGGCAGGAACAATGCTAGCATTGGCAAGGCGTTTCAGTGATTGGCATTATTTGAATGAGAAATGTTTTACAAATGTATTAGGCATGCATTGTAATGGTTTTATGATTTTTGGTTACTGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTAAAAGAGTTAATGCTCCAGTTCTGGGCACCTGTCCGGAAGAGAAGAACTACATACCCCAGGGGGCTTTGTGGTCAGAGAGGAGATATAACATCTGGCAAAGTCACATGATGTCACTTCTTCCTTCGGCTCTCGTCCCAACCACACGAATCATCTCAGCACTACTGTAAGGCCTACAGCTTTCAGATACGCTCTCATTATATTTTATTTATTAGCTTCAATTCTAATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATACCGTATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGTTGTTTTTAATTATTTTGAGGTCCCCTGTTTCCCTTTTCCAGAGGCACGGATTTTGTGAAATCCCTCCACCCCACTAGTCACATAACTGGGCCAAACCAGCCCGTAAACCGTTGACATTCTTGGTGGAGAACGCGGGCAAAAGCTACTTTTTAGCTTTCTAGAATGAATCTCTCTCTCTGCTCTCGGAGAGCTTCATTGGCTTCATTAGGAAAGTTTATCTCTCTTTCACAAGTGCTCACTGAAAACATGACCTTGAAAGTCCAGGTGGACTGCCAGTATTCTGGGATATTTGTAAACTTTGAGCACTACTATCTTACTTCTGTAAAGAGAAAAAAAAATATTCCTCTTTCTCTTGTACACCTGTTTGCAGAGGGAGCTGCTAATTTTACAGAACTTGTGATTTGTAAGCAGGCTCCCCATCTCTCCCTTGAATCCTTTATGCATTTTCTGAATGCTCATCCGATCACGTTGTTAATCTCCCTGAATGTACTCCTCATCATTACACTCAGTATTTGCATTTATCATATTTTGAAGAAGCCTTCCCCATAACCAGAGAATACTGAGTGAAAGGGAGTGTGGAGAGGCTTGAGAGGGACTTTAGAGAGATAGACATCTTCAGTGTCATGGAATTTTACTCCTGAACACCTGAAAGACCCTGAGAGCTTAAACAGATATTTGAGACAGGAATGTTGCGGCTCAGGCAGATCTGAGGAGGCACAAATGATTTGGGGCCTGGCTAATGCTTATCGGGCCTTATTCAATACTATCCCAGTGAGGGAGAGAGTTTCTGAAATTGAAAGAGAGTGTCTCAGAGCCGATAGGGAGAATCTCTAAGTCCAGAAACAGTCTCCAAGCTGAATGAGACAGTCTCCAATCTGAGAGAATCTCCAATCTGAGAGAAAAGCCCTCCAGTCTGAGGGCCTCTTCGATACGAGAGAGAGACCCTCCGAATCGAGACAGACTCTCTGCAATCCAAACTTGACAACCTTCAATCTCAACAAGATGCCCTCCGATCCGAACGAAATGCCCTCCAGTCTGAGAGGGACATCCTCGAGTCCGAACGGGACGTACTCCGAACTGAGACAGATGCCTTCCAGCACGCAAAATTCAGTCTTCGAGTCACCAAGGGACAGACTCAGTTTATATTCATGGGTAGACTGGGGGTTCCCAAGAGTTGACTATGTTGGAGGCCAAAATAAGCCTCACTGGGAAAGACTGGCAAAAACATCCTATTGCGACTGGCCCAGGGGCTCCCTGTATACTTGGTATTGATTACCTCAAAAGGGTATTTTAAGGATCCCAAGGGGTATCGATGGGCCTTTGGAATAGTTGCTGTAGAGACAGAAGGTGTTAAGCAGCTGTCTGTTTTGCCTGGCCTATCAGAAGATCCGTGTGTTGTGGGGTTGCTACTACTGAAAAATCAACAGGTACTGATTGCTACAAAAACAGTGCACAGACGGCAGTACCACACCAACAGAGATTCCTTGCTCCCCATTCATATGTTGATTCGTCAGCTAGAGAGTCAGGGAGTGATAAGTAAAACTCACTCATCTTTTAATAGTCCCATATGAACGGTGCGTAAAGCGAGTGGAGAATGGAGGCTGACGGTAGATTACCGTGGCCTGAATGAACTTACACCCCCACTGAGTGCTGCGGGTAAGTGCCAAGCAGCCAAGTGGTATGCCACCACTGACGTTGCTAATGCCTTCTTATCCATTCCTTTGGCCACAGAATGTAGGCTGCAGTTTGCTTCCACCTGGAGGGGTGTTCAGTATACTAGGAACCATTTGCCCCAGGGGTGGAAACACAGCCCAACCATTTGCCATGGGTTGATCCAAACTGCACTGGAACAGGGCAGTGCTCCTGTGCACTTACAATACATTGATGACATTATTGTGTGGGGCAATACAGCAAGGGAAATTTTTGAGAAAGGAGAGCAAATAATCCAGATCCTTCTGTGTGCTGGTTTTGCTATTAAGCGAAGCAAATCATAGAATCATAGAATCGTAGAATCACCAAGGTTCGAAAAGATCCACAGGATCACCCAGTCCAACCATTCACCAATCACCAATGGGTCTCACTAAACCATGTCCCTCAACACAACGTCCAAACATTCCTTGAACACCTTATAATCGCTTCAGGTAGTTATAGAGAGCAATAAGGTCTCCCCTGAGCCTCCTCTTCTCTTGACTGAACAATCCCAGCTCCTTTAGCCGCTCTTCATAAGGCCTGTGCTCCAGACCCCTCACCAGCTTTGTTGCCCTTCTTTGAACACGCTCCAGGGCCTCAATGTCTTTCTTACAGTGAGGGGCCCAAAACTGGACACAGTACTCAAGGTGCACCCTTACCAGTGCTGAGTACAGGGGGACAATTACTTCCCTGTTCCTGCTGGCCACACTATTTCTGATGCAAGCCAGGATGCCATTGGCCTTCTTGGCCACTTAGGCACACTGCTGGCTCACGTTCAGTCTAGCATCAATCAATACCCCCAGGTCCATTTCTTCTATACAGTCTTCCAGCCACTCTGCCCCAAGCCTGTAGCATTGCCTAGGGTTGTTGTGGCCAAAGTGCAGGACCCGGCATTTGGTCTTGTTGAACCTCATCCCATTAGCTTCAGCCCAGCTATCCAGCCTGTCCAGATCCCTCTGTAGGGCCTCGCTACCCCCAGGCAGATCAACACTTCCAGCCAACTTGGTGTCATCTGCAAACTTACTGAGGGTGCACTCAATGCCCTCATCCAGGTCATCAATAAAGATATTGAAGAGGACAGGCCCCAGCACCAACACCTGGGGAACACCACTCGTGACCGGTCGCCAGCTGGATTTAACTCCATTCACCACCACTCTCTGGGCCCGGCCCTCCAGCCAGTTCTTTACCCTGCCAAGAGTGTACCTGTCCAAGCCACGGTCTGTCAGCTTCTGCAGAATGCTGTGGGAGACAAGTCCCAACCACACGCATCACCTCAGCACTACTGTAAGGCCTACAGCTTTCAGATACGCTCTCATTATATTTTATTTATTAGCTTCAATTCTAATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATACCGTATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCTGCTGTTTTTTAATAATTTTAGGGTCTCGTTTCCCTTTTCTGGAGGTGCAGATTTTGTGGACTCCCTCCGCCCCACTAGTCACAGAACTGGGCCGAATCAGCCCGTAAACCGTTGACACGCAGAGTTTATTAAATCTGATAATATTGGTTGTTTCTGGAAAAATGTAGCAAAAAGTTATTTTTTTTTAAGTGTTTATAGAAATATATATATATATTGCCTGTTTCTTTGTTACATTTCTGAAATATACACTGTACAAATATAACTTAATAGAAGCTAAAAAAAAGTATGTAACTGTCCTCTTTATTATCACTGTGATACTGAATTGCCAAAGAATAAACCCTGGTATACGTATAGAAAAGCATCCTTACAGTAATTGCAACACACATCAGGTATATAGATGAAGAATGACAAATGCTGTTTCCTCTTTGTCACATTGTCTGTTTTAAGGCACATCCTGAAGGGAACAGAGGTGTGTGTCAAGCCTAGATGTGTCTCAGTTCTCTCCAAGAGTGCTCTCTGTTTTGCTGCTGGCACAGGATGCATTGTCAGTTACGTGGATCAGTGCTGAAGTCTATGTACTCAGTTGTTCTGGCCTATTGGCAAAGTCTTACTAACAAAAGAAATGACAGAATGAAAAATAGCAATTTTTAAATATATGTAATTTCTGTTAGTCACAGGCAGAAATTCATAGACTGAAGAAATATATTTTTCTGGATACAGAACTTTTCCCAACCTGTATGCTAGAAACCCATAATGAGCCAAGGAGCTTTTCAATTCATTATCATTAGTTTTACTAATGTTATAAAATCTTAACAAGTCTAAACATAGACATTAGAAGCAGCCTCCTTATATACCTAAAAAATAAAAACTATATTTCAAGAAATTTGTCAGTTTCTTACAAGTTAGAAGGAATGATTATTCAGGATTGATTTTTCCAGACTTGAAATCTAGCGTTTCATGCACACAAACACCAAGGCACTGTAATTCATTGTCTTAGGATTAATTCTGGGCTAGATTTGAATAAATCCAAAGACATGATCTCTTTATTTCTTTACTGCTGTTTTTTGCTTTATACTTGAAAATAACTAAATTACTGTTGATAGTACTCAAAAGCTTGGTCCAGAGCGATATTGCAGGATTATGTTAATGCCATGATCAGGAATTGAAATTTATCAGTTAAATTGATCTAAAATAGATAGGAATGAGCACCTTTAATGAAGAATTGTAATCAACACTGTCTATAGTTACTTGCATGTACCAGAATAGGCATTTATTCTTAGAAAGTGAAAATAAAATGCAACATTTGAAAAACTGTAAAATGAAGTGATATTGAAACATCTGTTTAATGCTGAAAAAGTTAAGAAAAGCTATTCTTTACTATTACAAATAACTTCTACAGTTTTTTGAAAACTGTCTAATAAAGGTAAATAATGGAAATAATCACAGAGAAAAAAAACAGTATTTAAAATATAGTTTTGTCATTAACCATTTTTGACATGTTAATTTTTGAATCTTTGTTAATCAGTAAGGGTTTTTTTTTTTAATACTTGTTTAACATCTGAATTAGCATTAGCCTATATCCAACAAAAAAAATTTACTATGAACTTCAGTTTTGTTAAACTGAGGAACTAGTAACCATTTAATTTAAAACTTCAAAAGAACATTATGCTTTTGATTATTTTAGTGCATGCATATAGCAAAAGAAAAATTATTTACCATATTCTGTTTATCTTATTAGATACTGTGTACTGTTTATTCATGACTCCCAGATTCAGATAACCCATCATTTTCCATGGATTCTCAAATTTTTGGACAAGTTGGCTACCTGCATATGTAGGCTACTACTGTATAAATTTATAAAAAGCTTTTGAGCAACCTGTGATGAGAAGAGGCACGTCAGTATTGGTACTCAGTGTTAATCTTGCACCAGCTTACTTTTTATTTACCTTTATAAAATACCAGTTCTTTTTTTTCCATTTTAACTGAAATTCTTCTGTGGTGTGTAATGTTCTTCAAAATTTCTATATCAAAAGTTCTGCACTGAACAACTGGAGTAGCTTTTTTTCCTGTTTCAATCAGTCTTCTAACTGGTTTTAATTATTGTTGTTACAG
Seq C2 exon
GCTATGGAGTTGCTTGTGGAAAAAGCAATCAGCAGCGCTACTGGACCACAGAGTCCTGGGGATGCACTTAGAAGAGTTTTTGAGTGTATATCTTCAGGAATCATCCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014545:ENSGALT00000023466:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.6=100)
A:
NA
C2:
PF075289=DZF=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]