GgaINT0110836 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N855]
Coordinates
chr1:161025614-161032473:-
Coord C1 exon
chr1:161032378-161032473
Coord A exon
chr1:161025726-161032377
Coord C2 exon
chr1:161025614-161025725
Length
6652 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTAATTATTGTTGTTACAGGCT
3' ss Score
7.02
Exon sequences
Seq C1 exon
GCTAGAGCTAATGGTCTGCAGTCCTGTGTGATTATCATACGTATTCTTCGTGACCTCTGTCAGCGTGTTCCAACTTGGTCTGATTTTCCAAGCTGG
Seq A exon
GTGAGTAGTATTCTTTTGAATGAGTCTTTTTAAAAGCACATGGTACTACAAGTAGGGCACTGGAAAGTGTTACTGCAGTTAAATGTAGATTTTTCAAGAGGTAGTATGTTTTTTTGTTTTTGTTTTTTGTTTTGTTTTTTAATTTAGAGGGAATGTAGAGTCCCTCTAAAAACTTAATTTTCTGAGGTTTAGTCATTTGAAGTTGGATTTTCTTTTTTCCAAAGGAATTTTCTTGTTCTTTTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGGGTAACATCCTGATTTTAGGTGCTTGTTTCTTTGCTTAAACTGTATTTAAAGAAATCTAATTTTTTTTCTGGTGGTTAGAAATTAAACTTCACTGAAACTGATTTAAAGTGATGTCAGCTGTGCCCAGATACCTCTGTGATAACAGAAAGGCTTCTTTAAAGAACAAATCATGGTAATTCTGCAATCATTAATATAACCCTTCTGTAAGATGAAATACCACAGGTTGCCCAGTGATGTGGTTGATGCCTCATCCCTGGAGACTTTCACAGTGAGGCTGAATAAGGCCCTGGGCAAACTGATCTAGCTGTAGATATCCCTGTTCATTGCAGGGAAGTTGGACTAGATGGCCTTCAGAGGCCCCTTCCAACTCTAAGGATTGTATGATTAGTCAGTGGATGTGTCAAAATTAGCATCGTAATCAGTGTCACTTAGAAACAGATATCGATATTGAACCCATTTACCATCTCATAATTCTTGCAGCTGAGCATTCTTGCAGCATTATTTTTTATTGCCTATTTTAAAAGATGCTCTCCAGGAGTGTAATTTATTCTTCAATTTGTGGACCTGACAAAATTTGTCTGAAATAAAATCTCTGAAAAGTGTGTATAGTATATAGATAAACTAGTTTGGTTCACAGACCAAATCCTGTTACGCTGTGCTGCTTCTCAATGTCAACTTTTCAATTTTGGCAGGAACAATGCTAGCATTGGCAAGGCGTTTCAGTGATTGGCATTATTTGAATGAGAAATGTTTTACAAATGTATTAGGCATGCATTGTAATGGTTTTATGATTTTTGGTTACTGGTATTCCACATCATAACATCATGTAGTGCACTGGGAGTAAAAGAGTTAATGCTCCAGTTCTGGGCACCTGTCCGGAAGAGAAGAACTACATACCCCAGGGGGCTTTGTGGTCAGAGAGGAGATATAACATCTGGCAAAGTCACATGATGTCACTTCTTCCTTCGGCTCTCGTCCCAACCACACGAATCATCTCAGCACTACTGTAAGGCCTACAGCTTTCAGATACGCTCTCATTATATTTTATTTATTAGCTTCAATTCTAATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATACCGTATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCCGTTGTTTTTAATTATTTTGAGGTCCCCTGTTTCCCTTTTCCAGAGGCACGGATTTTGTGAAATCCCTCCACCCCACTAGTCACATAACTGGGCCAAACCAGCCCGTAAACCGTTGACATTCTTGGTGGAGAACGCGGGCAAAAGCTACTTTTTAGCTTTCTAGAATGAATCTCTCTCTCTGCTCTCGGAGAGCTTCATTGGCTTCATTAGGAAAGTTTATCTCTCTTTCACAAGTGCTCACTGAAAACATGACCTTGAAAGTCCAGGTGGACTGCCAGTATTCTGGGATATTTGTAAACTTTGAGCACTACTATCTTACTTCTGTAAAGAGAAAAAAAAATATTCCTCTTTCTCTTGTACACCTGTTTGCAGAGGGAGCTGCTAATTTTACAGAACTTGTGATTTGTAAGCAGGCTCCCCATCTCTCCCTTGAATCCTTTATGCATTTTCTGAATGCTCATCCGATCACGTTGTTAATCTCCCTGAATGTACTCCTCATCATTACACTCAGTATTTGCATTTATCATATTTTGAAGAAGCCTTCCCCATAACCAGAGAATACTGAGTGAAAGGGAGTGTGGAGAGGCTTGAGAGGGACTTTAGAGAGATAGACATCTTCAGTGTCATGGAATTTTACTCCTGAACACCTGAAAGACCCTGAGAGCTTAAACAGATATTTGAGACAGGAATGTTGCGGCTCAGGCAGATCTGAGGAGGCACAAATGATTTGGGGCCTGGCTAATGCTTATCGGGCCTTATTCAATACTATCCCAGTGAGGGAGAGAGTTTCTGAAATTGAAAGAGAGTGTCTCAGAGCCGATAGGGAGAATCTCTAAGTCCAGAAACAGTCTCCAAGCTGAATGAGACAGTCTCCAATCTGAGAGAATCTCCAATCTGAGAGAAAAGCCCTCCAGTCTGAGGGCCTCTTCGATACGAGAGAGAGACCCTCCGAATCGAGACAGACTCTCTGCAATCCAAACTTGACAACCTTCAATCTCAACAAGATGCCCTCCGATCCGAACGAAATGCCCTCCAGTCTGAGAGGGACATCCTCGAGTCCGAACGGGACGTACTCCGAACTGAGACAGATGCCTTCCAGCACGCAAAATTCAGTCTTCGAGTCACCAAGGGACAGACTCAGTTTATATTCATGGGTAGACTGGGGGTTCCCAAGAGTTGACTATGTTGGAGGCCAAAATAAGCCTCACTGGGAAAGACTGGCAAAAACATCCTATTGCGACTGGCCCAGGGGCTCCCTGTATACTTGGTATTGATTACCTCAAAAGGGTATTTTAAGGATCCCAAGGGGTATCGATGGGCCTTTGGAATAGTTGCTGTAGAGACAGAAGGTGTTAAGCAGCTGTCTGTTTTGCCTGGCCTATCAGAAGATCCGTGTGTTGTGGGGTTGCTACTACTGAAAAATCAACAGGTACTGATTGCTACAAAAACAGTGCACAGACGGCAGTACCACACCAACAGAGATTCCTTGCTCCCCATTCATATGTTGATTCGTCAGCTAGAGAGTCAGGGAGTGATAAGTAAAACTCACTCATCTTTTAATAGTCCCATATGAACGGTGCGTAAAGCGAGTGGAGAATGGAGGCTGACGGTAGATTACCGTGGCCTGAATGAACTTACACCCCCCCTGAGTGCTGCGGGTAAGTGCCAAGCAGCCAAGTGGTATGCCACCACTGACGTTGCTAATGCCTTCTTATCCATTCCTTTGGCCACAGAATGTAGGCTGCAGTTTGCTTCCACCTGGAGGGGTGTTCAGTATACTAGGAACCATTTGCCCCAGGGGTGGAAACACAGCCCAACCATTTGCCATGGGTTGATCCAAACTGCACTGGAACAGGGCAGTGCTCCTGTGCACTTACAATACATTGATGACATTATTGTGTGGGGCAATACAGCAAGGGAAATTTTTGAGAAAGGAGAGCAAATAATCCAGATCCTTCTGTGTGCTGGTTTTGCTATTAAGCGAAGCAAATCATAGAATCATAGAATCGTAGAATCACCAAGGTTCGAAAAGATCCACAGGATCACCCAGTCCAACCATTCACCAATCACCAATGGGTCTCACTAAACCATGTCCCTCAACACAACGTCCAAACATTCCTTGAACACCTTATAATCGCTTCAGGTAGTTATAGAGAGCAATAAGGTCTCCCCTGAGCCTCCTCTTCTCTTGACTGAACAATCCCAGCTCCTTTAGCCGCTCTTCATAAGGCCTGTGCTCCAGACCCCTCACCAGCTTTGTTGCCCTTCTTTGAACACGCTCCAGGGCCTCAATGTCTTTCTTACAGTGAGGGGCCCAAAACTGGACACAGTACTCAAGGTGCACCCTTACCAGTGCTGAGTACAGGGGGACAATTACTTCCCTGTTCCTGCTGGCCACACTATTTCTGATGCAAGCCAGGATGCCATTGGCCTTCTTGGCCACTTAGGCACACTGCTGGCTCACGTTCAGTCTAGCATCAATCAATACCCCCAGGTCCATTTCTTCTATACAGTCTTCCAGCCACTCTGCCCCAAGCCTGTAGCATTGCCTAGGGTTGTTGTGGCCAAAGTGCAGGACCCGGCATTTGGTCTTGTTGAACCTCATCCCATTAGCTTCAGCCCAGCTATCCAGCCTGTCCAGATCCCTCTGTAGGGCCTCGCTACCCCCAGGCAGATCAACACTTCCAGCCAACTTGGTGTCATCTGCAAACTTACTGAGGGTGCACTCAATGCCCTCATCCAGGTCATCAATAAAGATATTGAAGAGGACAGGCCCCAGCACCAACACCTGGGGAACACCACTCGTGACCGGTCGCCAGCTGGATTTAACTCCATTCACCACCACTCTCTGGGCCCGGCCCTCCAGCCAGTTCTTTACCCTGCCAAGAGTGTACCTGTCCAAGCCACGGTCTGTCAGCTTCTGCAGAATGCTGTGGGAGACAAGTCCCAACCACACGCATCACCTCAGCACTACTGTAAGGCCTACAGCTTTCAGATACGCTCTCATTATATTTTATTTATTAGCTTCAATTCTAATTATATTGTATTATAGTGTGTTATCTTGCATTCCGATACCGTATTTAGTAAATTAGTTTGTTTCTCCTCAGATCGTTGCTGCTGTTTTTTAATAATTTTAGGGTCTCGTTTCCCTTTTCTGGAGGTGCAGATTTTGTGGACTCCCTCCGCCCCACTAGTCACAGAACTGGGCCGAATCAGCCCGTAAACCGTTGACACGCAGAGTTTATTAAATCTGATAATATTGGTTGTTTCTGGAAAAATGTAGCAAAAAGTTATTTTTTTTTAAGTGTTTATAGAAATATATATATATATTGCCTGTTTCTTTGTTACATTTCTGAAATATACACTGTACAAATATAACTTAATAGAAGCTAAAAAAAAGTATGTAACTGTCCTCTTTATTATCACTGTGATACTGAATTGCCAAAGAATAAACCCTGGTATACGTATAGAAAAGCATCCTTACAGTAATTGCAACACACATCAGGTATATAGATGAAGAATGACAAATGCTGTTTCCTCTTTGTCACATTGTCTGTTTTAAGGCACATCCTGAAGGGAACAGAGGTGTGTGTCAAGCCTAGATGTGTCTCAGTTCTCTCCAAGAGTGCTCTCTGTTTTGCTGCTGGCACAGGATGCATTGTCAGTTACGTGGATCAGTGCTGAAGTCTATGTACTCAGTTGTTCTGGCCTATTGGCAAAGTCTTACTAACAAAAGAAATGACAGAATGAAAAATAGCAATTTTTAAATATATGTAATTTCTGTTAGTCACAGGCAGAAATTCATAGACTGAAGAAATATATTTTTCTGGATACAGAACTTTTCCCAACCTGTATGCTAGAAACCCATAATGAGCCAAGGAGCTTTTCAATTCATTATCATTAGTTTTACTAATGTTATAAAATCTTAACAAGTCTAAACATAGACATTAGAAGCAGCCTCCTTATATACCTAAAAAATAAAAACTATATTTCAAGAAATTTGTCAGTTTCTTACAAGTTAGAAGGAATGATTATTCAGGATTGATTTTTCCAGACTTGAAATCTAGCGTTTCATGCACACAAACACCAAGGCACTGTAATTCATTGTCTTAGGATTAATTCTGGGCTAGATTTGAATAAATCCAAAGACATGATCTCTTTATTTCTTTACTGCTGTTTTTTGCTTTATACTTGAAAATAACTAAATTACTGTTGATAGTACTCAAAAGCTTGGTCCAGAGCGATATTGCAGGATTATGTTAATGCCATGATCAGGAATTGAAATTTATCAGTTAAATTGATCTAAAATAGATAGGAATGAGCACCTTTAATGAAGAATTGTAATCAACACTGTCTATAGTTACTTGCATGTACCAGAATAGGCATTTATTCTTAGAAAGTGAAAATAAAATGCAACATTTGAAAAACTGTAAAATGAAGTGATATTGAAACATCTGTTTAATGCTGAAAAAGTTAAGAAAAGCTATTCTTTACTATTACAAATAACTTCTACAGTTTTTTGAAAACTGTCTAATAAAGGTAAATAATGGAAATAATCACAGAGAAAAAAAACAGTATTTAAAATATAGTTTTGTCATTAACCATTTTTGACATGTTAATTTTTGAATCTTTGTTAATCAGTAAGGGTTTTTTTTTTTAATACTTGTTTAACATCTGAATTAGCATTAGCCTATATCCAACAAAAAAAATTTACTATGAACTTCAGTTTTGTTAAACTGAGGAACTAGTAACCATTTAATTTAAAACTTCAAAAGAACATTATGCTTTTGATTATTTTAGTGCATGCATATAGCAAAAGAAAAATTATTTACCATATTCTGTTTATCTTATTAGATACTGTGTACTGTTTATTCATGACTCCCAGATTCAGATAACCCATCATTTTCCATGGATTCTCAAATTTTTGGACAAGTTGGCTACCTGCATATGTAGGCTACTACTGTATAAATTTATAAAAAGCTTTTGAGCAACCTGTGATGAGAAGAGGCACGTCAGTATTGGTACTCAGTGTTAATCTTGCACCAGCTTACTTTTTATTTACCTTTATAAAATACCAGTTCTTTTTTTTCCATTTTAACTGAAATTCTTCTGTGGTGTGTAATGTTCTTCAAAATTTCTATATCAAAAGTTCTGCACTGAACAACTGGAGTAGCTTTTTTTCCTGTTTCAATCAGTCTTCTAACTGGTTTTAATTATTGTTGTTACAG
Seq C2 exon
GCTATGGAGTTGCTTGTGGAAAAAGCAATCAGCAGCGCTACTGGACCACAGAGTCCTGGGGATGCACTTAGAAGAGTTTTTGAGTGTATATCTTCAGGAATCATCCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014545:ENSGALT00000023466:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.4=100)
A:
NA
C2:
PF075289=DZF=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]