GgaINT0112104 @ galGal3
Intron Retention
Gene
ENSGALG00000015123 | ZDHHC23
Description
NA
Coordinates
chr1:86357971-86363485:-
Coord C1 exon
chr1:86363318-86363485
Coord A exon
chr1:86362507-86363317
Coord C2 exon
chr1:86357971-86362506
Length
811 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATCTTTTTCCCTGCTGCCAGCTC
3' ss Score
7.83
Exon sequences
Seq C1 exon
GATTAACAGCTGTGTAGGGGAGCAGAACCACCAAGCATTCATCCTTGCACTGTTCTTCTTCATGCTCACCTCTCTGTATGGAATTATGCTGACTCTAGACACCATCTGTAGGGGACGAACCCCATTCACAGCATTGTTCTACTGCCCTGGGGCCTATTCTGACTACAG
Seq A exon
GTGAGAGAACTGGGTGGGGAACTCAGGCCTGACCAGGCAGCTTAGCTCCTTAGCTATTCTTCATTGTGTTCTCAGGATCAGTGCTATTGGCTGTCAGACCTGATCTAGAAGTGCTCCTTAAATGGCTCTGGAAAGCAGGGATGCATCTCTGCTTTTGTGAAGGATGGGAGCCTGTGAGAGCTCACAATTAGAGCAAATTGCTGGAGAAGGTGGGACTTAAAAATCTTTATTTACAGTGTCCTGTGTAGATAGGCACTTTATAGATGTTTGTTGCCAGTTAATGCCAATAGTCCAACAGTCTGGAATCAGCATGCTGTCTCACCGAGGAAGGAGATGGCGTTTGTCTAATGGCTTTGTCAATTCAAGTTATTTGCTCATACAGTGTTAACATGCCTTGTCTGGCTGGGAGTGGGGTGAGGAGCTTCAAACACATGTTCAGAGACTCCTACCACTGCTGTATAGAGTACAGCAGCACAAGTGACTGCCTTCTTCTGTACTCCATCATCTGTCAAGCATGAGCGCTATTGTTTCCTTAAGTAAGGTCTTTACAGCAGCAAGAGTGAAGCGCTAGGTAGTACCAAAGGAATGTGCAAGAGTAGCTCTGGTAGTGCTAAAAGCTGTCATTAAGTATGCCACAAAGCTTTAATTTTGAGAAAGCCTTCAAGGATTATGTGATGAAAGCAGCGAAGTGAGATCACTGTGGCAGATGTAGACAGGGATTTGAAAGGCTAGTGATTACCAGGGAAAGTCACTGTAAAGCAGCTGCTCCAAAACTAAATGGCTTCCTTCCCATCTTTTTCCCTGCTGCCAG
Seq C2 exon
CTCTGCTCTGTCGTTCACCTGTGTGTGGTACTGTGCTATTGTAACAGCTGGCATGGGATACATCCTCCTTATCCAGCTGTTGAACATCAGCTACAACGTGACTGAGAGGGAAGCTCGGCTGGCTCTGCGGGACAACGCTGGGCGCAGGCTCCTGGGTGGGTTAGTGATAGACACTGGCCAATATAACAGGGGCTTTCTATGCAACTGGGGCCATTTCTTGAGTCTGGGCTCTCCCCCCCAGCAGCGCTCTGCTGAAGACATTGTGTGACACCTTTTTTTCTGCGGATGACGTTGACTGACTTTCCTTAGTAGGGGAACGGCCCCTTCCACTAGAACTTCCTCCTCCACATCCTTCCTTCGTGGTCGGTGTATGGGCTGCCCATCCCATCGCAGACATCAGAGGCTTTCCCAAGCAGAAATGGTTCTTTGTGTGCCATCAGCCAGCAATAGGATGCGGAAAGCAGTAAGCCATATGCACAAACCTGGAGCGCGGGAACCCGCTGCCTTTTTGCACTGTGGGGAACTTTGTGCAGCTCGGCAGGAAGAAGAGCACACTGTTATGAGAACTTGAGTTTTCATTAGGTGTGAACTCTGGCGTCAACGGGAACCTGCTGTTGGATTTCAGACTGTACGCTGTTTCTTGCAGCTTAAGGAATCTCTATCTTGTACCTACATGCAGTGCTTCAGTGTTGTTAGAAGAGTGAACTTTTAATATAGAAAACAGATGGACTGGTGCAGAAGCCATGCTGTTTAGCTGAAAAAAAAAAAAAAGACTGCTTAGGCAGTCACTGAGTGCTCCATCATCTCTGGTGCATTTTTCTTTTTCTTCTATCCCATCCAGCTGCATACATGCTATTGCTTGTATTAAGTGCCTTTGTGAGCAACATTCCTGTAGGGCATTGTAAGATCCTCTCATCATTTGACCTGTCTCTCTGACTGGGTGAGAAGAGTGTCACCATCATTCTTTTTTGTAAGCTGTTTGTGTTGGTTTGATGGCTTGTCTCATTTCCCTCAAAATATTTCTGCTCTGATTATGGATTCTGACATGAGACAGCAGGTGTAAATATACAGAGTAAGAAGGAGAATGTTTTGAAGGAACGACTGTGAGGGGAGAACAAGCTGCTGTCTGCTGTTGCTTTACACGAACTGCCCTACTCCCTCCCTCTCAAGGAGGAGGGAGTCTGTGGGAGAATTGACTTTGTTCCTAACAGTTTTGGTAGACAACGTTTTGATTAGTTGTGTTGCTAATAAGAATGATGCAGTCTTTCCTGAACCCTGACACCAGGGAGTTTCCCTGGTGCCTGACTGTGGTTTTTCTCAAGCCGGGAAGCTGAGGAACAGTTTGGTGTCTGCATATGTATAGAGCTGGAGAGGATGCTTTGGAGCTGGCAGCTTTTGGGGTAGCTGACCCACAGTGGCAGGTAGATGAATGTGTTAACTCTGTTCTACAAGAAGGCTGTGTGTCCTTCAGCAGCCTGCAACTGTATTATTGCCTAGACGTGAGCTTCAGCTGAAATCACACAAGGTTTTAGTGGTGATGGCTTCTACTTTTTTGGGGGTGGGGTTTTTGTTGGTTTTCATTTTAAGTCCTTTCTGTGTGTTGGCCCTGCAGAAAGGTCTGGCTGGAAAAATCTGGAACTGTGGCATGAGAGTTATGGCTTGAGCCTAAGATGCAGGAGCAGTGGTAAGAGCCTTGTCTTAGTTAATGATGCCTTCAGATGCGTGTGCAATTTGCACAGATCAGACTTGCCCTGCTTCCGTTTGTGTGGTAGGCAACTAGGGGGTGTTGCTTGTGTGATGCAAATTCAGTGTGCACTGTTGTACGTATTCTCTAAAGAATAGATGGTACATGGTGCTAAGGGACAGCAGAACTGGGACTGTCCCTTGAGATCCCTGCCATATTTGGTGTGTATGCTCCCGAGTATGTGTCCCAGTTTAAGGTAAAGAGCATACACCTCTTTGCACTGTTTGGTTTCCTCAAGTGGCACCTACAATTTCTATAACCAGCAGATAACCAAGGAGCAGCTGCACTTGGAATGTGGCTGTTCAGGAACAGCTACTGATTTACTAGGTGTCCTTTATTTCTTCTTATCCCTTTTCAACCAGTGAGCAGCTCTTTAAAGGAGCTGAAGGAGGCACCTCTTGTCCTTCCTGCCTCTTGTCTGAACACACTTAGATTTCTGACAACTTCCCTGGCACTAGTGTGAAGTAAAAGGCACTCGACCGGACTCTGCTATTTCTCTGGCAGCTAAACATGATCTTCTCACTGTTTGGGGCTGGAGTCTGACCCTAGAAGTTTAGCTTTACACAAAGATCTCTCCTCCGTGTGAGTTGTCTGTAAATGCTTCCGTGGAACATATGCATTTTGCAGTGCCTGCTGAGATGAGCTGAAGCTTGGCAACCCTGGAGCCAGAGTTAGCAGGCTTGTGATCTTCCCAAACCTTGTTCTGCTGCCATGTGGAAAGATGAAGCCAGAATATGCTCCTGGACTAAACCCCTGCTGTGAAGATAGCCAACCTTTCTGCTCCTCTGAATTACATGCACAGACATCAATCACGCCTGTGAACTGAACAAGCTCTGGGAGTGCTCACAGATTTGTGATAAGTGGTTTCTCGGAGTTCTGCTCTGGGCTGGGAGGAAGCAGAGTTGGGCAGGTGACAGATTCATTCCCCTGGCAGTCGCCTGACCCTGTTGTACTCATTCCCTCCCATGGGCGGGTTTTCATTATTTTGCAGCCTGCATGTCAGTGTAGCCTTGTCCCTTGCTTTTTAATGAGCTCTCATATGGGAAAATTTAAACTACTTATACCAAGGCATTCTCAGTGGAATTGTCAGTGTGAGCTTGAGTGCAAATTAGGAATCAAGGACCTTGGACTATTGTAACCCTGCCATGCTTGATCAAGCCCACTCCGGTATAGTATATAGGGTAAAGTGCTTAAACTAAGTTCTATTTTTGCACCTTATACAGAGAGAGTCGGAATCATTCAGGACAATAAAATGCTTGCAAGACTGGGTTTTTGTATGAGGAGAATGAAGTGCTGATTTTCCAGTGGGCAAGAGGTTCACTTCACTGTAGTCTGCATAGCAATGGTGGCTTTTGTTTATCCTCCTGGCTTCTTGCTGAGAGGATTTACCTTGTGAATACCTTTGGAGATGGAAAGCATGATACATCCCTGTCTGAAAGGGTGGAAGTGTTGAAAGCTTCAGATGTATGCACTGGAGCTCTCCTTTTCATAGCCTTCAGAATTGAGAAGCCCTTAAAGGGCAGCACTTCCTGTTTCGCTTCCAATGCAGGCAGGCTGCTGTGATACCTTGTGCACTAAAAGGCAGTTTTTGTTTTACATTTTATTGCTGAGCTCAGTGTTGGCCACGCTGGGAGGAAAATGTTAAAAACTAGTGCAACCTGGTAGGGCTGGAGAGTCAGTCCATAAAACCAGTAAAACAGCATGCATCAATGTGGCAATAAGAAAACAGTACGCTGCTGGTTATTTCAAAAGTTTTCTGTGTGAGAGTAGAGTACCCAAAGATAATAAGAAGCAGTGAAGTATTTGAGTGGTATCTAGCCTTGATGTTTCTTCACCCATACTTAGAAATGGGTGGATCCTGCTTTAACCATGACCTTTTGTTGTTTCCCGACTGGTTTGGTCTTACTGAAGTGCCAGGGTTCTAATGTTGCTGCTGTCCTAGTGTTAAGCCCCCTGTGTACAAATACTAACACCCTGTTGTTTGGTGACTGTACTAAGAGCTGTACACCATTAGATACACTGTGTAAATGGTGGCTTGGCACTCTTAACGTTGTCATCTTAAACTGAGATGCTTTTTGTAGACGAGTCACAGGTCCCCACATAGACCATTTCTCCATTTAACTTGTCTAAGATGACAAGAGTCGCTGGTGAGCCCAAGTTGGTGCTGCTTGTAATTTCTTATCATATTTAGCCTTCATGCTATGATGGTGCTTTTTCAAAGTAGGTTGCTTTCAAGTGTCATGGTGGAAACCATTTGCTATAAAAGTTCTTCTAGAGTTAAAATGGATACTGCCTCATTGCCTAATGTCTTAATAATGTGCTTGACATTTTCCTTCTATATGAGTGTATATTGCCTCATTAGGGCAGAAAGTGTGTGTGATTATGGATGTTTTCCTATATTGCCTTCAACTTCTGTTTTCTTAAGATTTTCTTCCACTACTAGGGTGTTTGTACAGCAAAAATCTTTGGACAGGTGAGGTTCTTTCTGAAATGTGGAAATTCAGACTCCCAAAATCTTCATGAACTGCATTTAATTACAGTACTAAAAATGACGTGCTCTGGAAGAACTGTCTGCTTTGGGGAGTGGAGTGTGTCTTGTGTGAGATTTTCTTGTTTCTGTTTTGGTTTTCCTTTCCCCCCTGCCAAAGCTATAGGAAGAATTTCATGAAGTATTTGTGAGCTTCGTTGAAAGGACTGGTGTGTGTGTGCGTGTGTGTGTGTCTCCATAGTATATTGTATCCAATGATTTCGAATAAGATGCAATTATAAATCAAAATAAATTATCAGAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015123:ENSGALT00000024406:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=FE(27.9=100)
A:
NA
C2:
PF0152915=zf-DHHC=PD(20.4=45.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAACCCCATTCACAGCAT
R:
AAGTCAGTCAACGTCATCCGC
Band lengths:
357-1168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]