HsaINT0185241 @ hg19
Intron Retention
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:28654]
Coordinates
chr3:113675186-113677385:+
Coord C1 exon
chr3:113675186-113675353
Coord A exon
chr3:113675354-113677209
Coord C2 exon
chr3:113677210-113677385
Length
1856 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCCTTTTTCCCTCTCCTAGCTC
3' ss Score
7.75
Exon sequences
Seq C1 exon
GATAAATAGCTGCGTTGGAGAATCAAATCATCAAGCATTTATACTTGCCCTTTTGATCTTCTTGCTCACCTCGGTGTATGGGATCACACTGACCTTGGACACCATTTGTAGAGACAGAAGTGTCTTCACAGCTCTTTTCTATTGTCCTGGAGTTTATGCAAATTACAG
Seq A exon
GTGAGCAGTGGGTACCACAGTATGGAGGCCCCCTGGGAAGTAATGGGTGTTGCCATTGACAGGGACTATTACTACTTGGTTAGGAGTTCTCAATCAAAACATAGGCCAGGCTATGGAAATGCTGGGTATCCCTGGAATTGCCAGCAAAATTGTGCATTGGTGATGTGTGTTTTTCAAGGGTGCTGTTAAAAGGATTGTTGACCTTTAAAAAGTGAAGAACTAGTTCTCTACAAACAGGACCAGGCCTAATCAGGGACTTCCAGAGTCAAATGACCACTCATAGGCTCAAAAGTCGCAACAGTGAAACAGAAACAATAAACAAAAACTAGCAGCCCCAGGGCACATATGTGCCTATTTTGTCATAACGATCAGAAACCTTCTCACTTTACTGCTGCTTTCTGATGTTTTTTAGTCCAATCTTAATTTACTGCTTCCGACCCTTTTGAGATGTGCTCGACATCTCTATAACCTTGCTTTTCTTTCTAACCTCTCTTGGTTTTTCCTGTTCTACTTTCTTTCTTTTTTTAATCACCACTGATGATTACTGTGATATGTAGGTCAAAATTTCCTTAGGCCCCTTTATAGATTGTGAAGATTTCCAGGCCATGGCAAAATTTGGGATTCTTCCGCTTCGGCCTCAGCGCCCCCTCCCTGAATGCTGGGGCCCCCCTCTGCCCATGCTCTTTATTCCCTTCCCTTCATCATCCTCTCTGACATAAGTGCTCTGGGGTATCTGTGGTTTGGCCCTTTTCTTTATTCTCACTCTTCATTTTCAGAACAATCCTTGCTTTCTTTACAAAGTATCCCTTTGTGGCATTTGTTTTTATTAGCCTGTGGACAGATCTCCCCATTGTCATCCTAGAACCAGACACCTGTGGGCATTATTAGAATAGATTGGTCTTCCTCAGATTAAGTTTCCTTCCTCACTGTGTGGAGAGTATCTCCAGCATGTGAATGAAATTCTCTGCTAACGCTGCAGGTGAGGCCCGTCCTGAAGCACAGCATGTCTGTGCACTCTCGGTGCGGAGGCGAGGGAACCGAGGAATACAGTCCTGCCATTGCTTCTCACCCTGCTCTGTGCAGGCGATTCACAGCACCTCATCTTTTTGGTTAGGTCCTTGGATTTAATAGTCTTTGAGGTCCCTTCAGCTTTTACAAATGAAGATTCTGAATGAACTTATTTCTAACTAACTCTTAATTTGCGAATGTTGGAAAATCATCAAATGGCAGAGGCTAACTGGCAGCCTGTCTCATTAGTGAGCCTGAGAGGAGCTTCCCTACCTTGTGTGATTGTGTTGGGCTTTAGGAGGGTGAATTTGGAATGTCTCGGTGTTCCTACATCCAGGTAAGCACAGGGCTGCTGGGGTTGGGAGTCGTCCATCGTCTTTTCATTCCTCAGCATTGGACTGGAAAGAATGGAGATTAGTAACTTTAGCACTGTTCCTCGGCATCCACCTGCAGCTTCCTAGAAGACATTTATAGCAGTCCCTTGGTGCCTTTGTTTTCTCATGAGTTAGATGTAATTTACGAATTACTTGTTTATTTAACAAACAGGTGTTGAACGCTGTTATGTCAGGCAGCGTGCTGGGTGTGTGGAGGGTACAAAATGCAAAAAACAGTCCCTGCTATTCTAGTGTAATATACTAGAAAATAGGCACCAGTAATTATAGAATAAACACACACATTCTCCTACTTAAGCAGGTTATTGGCATTCTGAGTATCTTCCAGTTCGGAGGGTTGGGGAAGATGCCAAAGTCTTTAGTAATAAGTAAAAAAATGTGTAAAACGTGAGAATGATGACAGTTTTCTGAATTTGACAAAAACGGCAGCCCTGACAGCCTTTTTCCCTCTCCTAG
Seq C2 exon
CTCGGCTCTGTCCTTCACCTGCGTGTGGTACTCTGTGATCATCACAGCAGGCATGGCCTACATCTTCCTGATCCAGCTGATCAACATCAGCTACAATGTGACTGAGCGGGAAGTCCAGCAGGCCCTCCGACAGAAGACTGGGCGCCGGCTCCTCTGCGGGCTCATCGTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307-ZDHHC23:NM_173570:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=FE(26.5=100)
A:
NA
C2:
PF0152915=zf-DHHC=PD(20.9=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATAGCTGCGTTGGAGAATCA
R:
CTGTGTCCACGATGAGCCC
Band lengths:
342-2198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)