MmuINT0178299 @ mm9
Intron Retention
Gene
ENSMUSG00000036304 | Zdhhc23
Description
zinc finger, DHHC domain containing 23 [Source:MGI Symbol;Acc:MGI:2685625]
Coordinates
chr16:43969259-43971679:-
Coord C1 exon
chr16:43971512-43971679
Coord A exon
chr16:43969527-43971511
Coord C2 exon
chr16:43969259-43969526
Length
1985 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
AAAGACCCCTTTCTCCACAGCTC
3' ss Score
7.68
Exon sequences
Seq C1 exon
GATAAATAGCTGCGTCGGAGAATCAAACCATCAAGCATTTATACTTGCCCTTTCCATCTTCTTGCTCACTTCGGTTTACGGAATATCGCTGACCTTGAACACCATTTGTAGGGATAGAAGCCTCTTCACAGCCCTCTTCTACTGTCCTGGAGTTTACGCTAATTACAG
Seq A exon
GTAGGTTGTGCAACCCTCTGTCAGGAGGGCCAGCGACAAAGTAATAAATGTTGCCAGAAGTGAGAGTTACCTGCTCCTAAGCTAAGTCAGCGGTTCTCAGTCAAAGCATAGGATGGGCTTTGGGGATGGTGGGCAGCCGTAAAATTGCCAGCAAAATACTGCAGTGGTTATGAGTGAGCTTCCAGGGTAATGTCAGACGCATCATCGATGGCACGCACCTTTAATCCTAGTGCTTAATGTGCAGAGGCAGGATCTCTCTGAGTTTGAGGGCAGCCTGTTCTACAAAACAAGTTCTAAGCCAGCAAGGACTCCATAGAGGGACCCTGCCTCAACAAACAAACAAGGCTTGGCTCTGTCAGGGACTCCACAGCTGGGAAGTTTCTTTGTGCCTGAGGTTGCAGTGTGCTCCTTTTGAGAGACATTCCTATCTGTGTAGCCTTTCTTTTCTCTCTAACCTCTCATGGTTTGTTCTAATTTTTTTTTTAAATTCACCACTCATGATTACTGTGTTATCTAGGTCAAGATTTCTTAGGCATCATTAGGTGGGAACCCATTTATAAACTTCAGATTTCCATGCAGTGTTGTAAGTGGGGCTCTTCTGTGTTGATCCACCCCCACACACTGAGGTGTTCATGCCACTCCCACCCCAACAGACCAGGAGCGCTTTTGCTACTTCTACCTCCACATGCCAAGGGTGCTCATCCCCCCCCCACACACACACCAGGGGCCCCCTTAGCACTCTCACCCTTACAGAGCAGGAGTGCCCTTACCAACTTCCATGCCACACATCAAGGGCCCCTCCACTGCCAGGTGCTTCCTGTCCATTCTCTAAGTTCTTCACTCAGCGTGAGGGCTCTGGGGGTCTGGTCTCTTCTTTCCTCTCACTCTTAGCTCTCAGAGCCAGTTCTGTTTTTGCTACCAGACACCCCTGCGTGGTGTTGGTTCTTAGTAGTCTAGATTTGGACATTATAGATATTTGGGGGTGACAGTTAGCCCTCTCTTCTTGTGGTAACTTTCTTCTCTAGCCCTATGGAAAGTCACTGTGAATTCCTTGGCCATCATGAGGGTGATAAAGTTGTAATGCAGAATGCCTGTGTCCTTGGTGGGTTGACTCAAGTGAATAGGTGCCCAGTGCCACCATTATGTCTTACCTCATTCTTGTAGTGGTTCCTGTCGCTTCAGCTTTATGGAGAAGTTTTGGGTTATCATCTGTGAACTCCTGTGTAGTTTTACAGTTGAAGAGTCTGTGTGTATCTTTTTCCAGCTAATTCTTCAAGTGTGTATGCCCCTCCCTGTAGCTCCTGAGGGAGCCCGGAAGATGATCTTGCCATGTTTGATTTTGTTTGGAATGTTAGGTTCTTAGAGATATTGTTTATTTTTGAAAATTGTTACTTAATGTAAATGTATGTGAATGTATGACTTCACACAGCTGGAAGGGGGCATCTGATGGGCATCTGATCCTTAGGAATGGATTTGCAGGGGGTTGTGTGCTAACTTTCTAGGGTACTAGGAACTGACCCCAGGACTGTGAGCCATTGCTCCAGCCTGGCTCTTAAAAGGCTGTTGACTTGAGAGTTATCCTCTCTGTGCTCAGTCAGCACTAGATTGCAGACATAACAGTAGCCCTGTCCTTAGGTTGCCATCTACAGCTTCTTAGAGGACACCAACAATGACTCCTGGAACCTGTTTCCTCCTGAGTTAGTTATAACAGTTACAATTAGGAATTGCTCATTCATTCAGCAAACAGGTGCTGAATACCTTGTTGTCTGCAAAGTATAAGAAGACATCCTTTGCTAAATGTAACTAGAATGTAGCTAGAAAAACATGTACTAACAATCCAAAGGAGAATTGAAAAGGTTCCATGGGGTTTTGGCATTCTGAGGATACTATGATATCCTTTGGTAGGGTGGGGGGTGGGGACTGGAGAGGCGCTTGAGTCCCTACTGACAAGTACAAAATGTTCAGAAAGACCCCTTTCTCCACAG
Seq C2 exon
CTCAGCCCTGTCCTTCACCTGTGTGTGGTACTCTGTGATCATCACAGCCGGCATGGCCTACATCTTCCTCATCCAGCTGATAAACATCAGCTACAATGTAACGGAGAGGGAAGTGCAGCAGGCCCTTCGCCAGAAGACAGGGCGCCGGCTCCTCTGCGGGCTCATCGTGGACACAGGCCAGTACAACAGGGGCTTCCTGCGCAACTGGCTCCAGTTCTCCACCCTGGGCACACACACAGTCCACACCCCCGCCGAAGACATCGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036304-Zdhhc23:NM_001007460:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=FE(26.0=100)
A:
NA
C2:
PF0152915=zf-DHHC=PD(21.3=48.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTCGGAGAATCAAACCA
R:
CTGTTGTACTGGCCTGTGTCC
Band lengths:
348-2333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: