GgaINT0112104 @ galGal4
Intron Retention
Gene
ENSGALG00000015123 | ZDHHC23
Description
probable palmitoyltransferase ZDHHC23 [Source:RefSeq peptide;Acc:NP_001012837]
Coordinates
chr1:82459933-82465447:-
Coord C1 exon
chr1:82465280-82465447
Coord A exon
chr1:82464469-82465279
Coord C2 exon
chr1:82459933-82464468
Length
811 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATCTTTTTCCCTGCTGCCAGCTC
3' ss Score
7.83
Exon sequences
Seq C1 exon
GATTAACAGCTGTGTAGGGGAGCAGAACCACCAAGCATTCATCCTTGCACTGTTCTTCTTCATGCTCACCTCTCTGTATGGAATTATGCTGACTCTAGACACCATCTGTAGGGGACGAACCCCATTCACAGCATTGTTCTACTGCCCTGGGGCCTATTCTGACTACAG
Seq A exon
GTGAGAGAACTGGGTGGGGAACTCAGGCCTGACCAGGCAGCTTAGCTCCTTAGCTATTCTTCATTGTGTTCTCAGGATCAGTGCTATTGGCTGTCAGACCTGATCTAGAAGTGCTCCTTAAATGGCTCTGGAAAGCAGGGATGCATCTCTGCTTTTGTGAAGGATGGGAGCCTGTGAGAGCTCACAATTAGAGCAAATTGCTGGAGAAGGTGGGACTTAAAAATCTTTATTTACAGTGTCCTGTGTAGATAGGCACTTTATAGATGTTTGTTGCCAGTTAATGCCAATAGTCCAACAGTCTGGAATCAGCATGCTGTCTCACCGAGGAAGGAGATGGCGTTTGTCTAATGGCTTTGTCAATTCAAGTTATTTGCTCATACAGTGTTAACATGCCTTGTCTGGCTGGGAGTGGGGTGAGGAGCTTCAAACACATGTTCAGAGACTCCTACCACTGCTGTATAGAGTACAGCAGCACAAGTGACTGCCTTCTTCTGTACTCCATCATCTGTCAAGCATGAGCGCTATTGTTTCCTTAAGTAAGGTCTTTACAGCAGCAAGAGTGAAGCGCTAGGTAGTACCAAAGGAATGTGCAAGAGTAGCTCTGGTAGTGCTAAAAGCTGTCATTAAGTATGCCACAAAGCTTTAATTTTGAGAAAGCCTTCAAGGATTATGTGATGAAAGCAGCGAAGTGAGATCACTGTGGCAGATGTAGACAGGGATTTGAAAGGCTAGTGATTACCAGGGAAAGTCACTGTAAAGCAGCTGCTCCAAAACTAAATGGCTTCCTTCCCATCTTTTTCCCTGCTGCCAG
Seq C2 exon
CTCTGCTCTGTCGTTCACCTGTGTGTGGTACTGTGCTATTGTAACAGCTGGCATGGGATACATCCTCCTTATCCAGCTGTTGAACATCAGCTACAACGTGACTGAGAGGGAAGCTCGGCTGGCTCTGCGGGACAACGCTGGGCGCAGGCTCCTGGGTGGGTTAGTGATAGACACTGGCCAATATAACAGGGGCTTTCTATGCAACTGGGGCCATTTCTTGAGTCTGGGCTCTCCCCCCCAGCAGCGCTCTGCTGAAGACATTGTGTGACACCTTTTTTTCTGCGGATGACGTTGACTGACTTTCCTTAGTAGGGGAACGGCCCCTTCCACTAGAACTTCCTCCTCCACATCCTTCCTTCGTGGTCGGTGTATGGGCTGCCCATCCCATCGCAGACATCAGAGGCTTTCCCAAGCAGAAATGGTTCTTTGTGTGCCATCAGCCAGCAATAGGATGCGGAAAGCAGTAAGCCATATGCACAAACCTGGAGCGCGGGAACCCGCTGCCTTTTTGCACTGTGGGGAACTTTGTGCAGCTCGGCAGGAAGAAGAGCACACTGTTATGAGAACTTGAGTTTTCATTAGGTGTGAACTCTGGCGTCAACGGGAACCTGCTGTTGGATTTCAGACTGTACGCTGTTTCTTGCAGCTTAAGGAATCTCTATCTTGTACCTACATGCAGTGCTTCAGTGTTGTTAGAAGAGTGAACTTTTAATATAGAAAACAGATGGACTGGTGCAGAAGCCATGCTGTTTAGCTGAAAAAAAAAAAAAAGACTGCTTAGGCAGTCACTGAGTGCTCCATCATCTCTGGTGCATTTTTCTTTTTCTTCTATCCCATCCAGCTGCATACATGCTATTGCTTGTATTAAGTGCCTTTGTGAGCAACATTCCTGTAGGGCATTGTAAGATCCTCTCATCATTTGACCTGTCTCTCTGACTGGGTGAGAAGAGTGTCACCATCATTCTTTTTTGTAAGCTGTTTGTGTTGGTTTGATGGCTTGTCTCATTTCCCTCAAAATATTTCTGCTCTGATTATGGATTCTGACATGAGACAGCAGGTGTAAATATACAGAGTAAGAAGGAGAATGTTTTGAAGGAACGACTGTGAGGGGAGAACAAGCTGCTGTCTGCTGTTGCTTTACACGAACTGCCCTACTCCCTCCCTCTCAAGGAGGAGGGAGTCTGTGGGAGAATTGACTTTGTTCCTAACAGTTTTGGTAGACAACGTTTTGATTAGTTGTGTTGCTAATAAGAATGATGCAGTCTTTCCTGAACCCTGACACCAGGGAGTTTCCCTGGTGCCTGACTGTGGTTTTTCTCAAGCCGGGAAGCTGAGGAACAGTTTGGTGTCTGCATATGTATAGAGCTGGAGAGGATGCTTTGGAGCTGGCAGCTTTTGGGGTAGCTGACCCACAGTGGCAGGTAGATGAATGTGTTAACTCTGTTCTACAAGAAGGCTGTGTGTCCTTCAGCAGCCTGCAACTGTATTATTGCCTAGACGTGAGCTTCAGCTGAAATCACACAAGGTTTTAGTGGTGATGGCTTCTACTTTTTTGGGGGTGGGGTTTTTGTTGGTTTTCATTTTAAGTCCTTTCTGTGTGTTGGCCCTGCAGAAAGGTCTGGCTGGAAAAATCTGGAACTGTGGCATGAGAGTTATGGCTTGAGCCTAAGATGCAGGAGCAGTGGTAAGAGCCTTGTCTTAGTTAATGATGCCTTCAGATGCGTGTGCAATTTGCACAGATCAGACTTGCCCTGCTTCCGTTTGTGTGGTAGGCAACTAGGGGGTGTTGCTTGTGTGATGCAAATTCAGTGTGCACTGTTGTACGTATTCTCTAAAGAATAGATGGTACATGGTGCTAAGGGACAGCAGAACTGGGACTGTCCCTTGAGATCCCTGCCATATTTGGTGTGTATGCTCCCGAGTATGTGTCCCAGTTTAAGGTAAAGAGCATACACCTCTTTGCACTGTTTGGTTTCCTCAAGTGGCACCTACAATTTCTATAACCAGCAGATAACCAAGGAGCAGCTGCACTTGGAATGTGGCTGTTCAGGAACAGCTACTGATTTACTAGGTGTCCTTTATTTCTTCTTATCCCTTTTCAACCAGTGAGCAGCTCTTTAAAGGAGCTGAAGGAGGCACCTCTTGTCCTTCCTGCCTCTTGTCTGAACACACTTAGATTTCTGACAACTTCCCTGGCACTAGTGTGAAGTAAAAGGCACTCGACCGGACTCTGCTATTTCTCTGGCAGCTAAACATGATCTTCTCACTGTTTGGGGCTGGAGTCTGACCCTAGAAGTTTAGCTTTACACAAAGATCTCTCCTCCGTGTGAGTTGTCTGTAAATGCTTCCGTGGAACATATGCATTTTGCAGTGCCTGCTGAGATGAGCTGAAGCTTGGCAACCCTGGAGCCAGAGTTAGCAGGCTTGTGATCTTCCCAAACCTTGTTCTGCTGCCATGTGGAAAGATGAAGCCAGAATATGCTCCTGGACTAAACCCCTGCTGTGAAGATAGCCAACCTTTCTGCTCCTCTGAATTACATGCACAGACATCAATCACGCCTGTGAACTGAACAAGCTCTGGGAGTGCTCACAGATTTGTGATAAGTGGTTTCTCGGAGTTCTGCTCTGGGCTGGGAGGAAGCAGAGTTGGGCAGGTGACAGATTCATTCCCCTGGCAGTCGCCTGACCCTGTTGTACTCATTCCCTCCCATGGGCGGGTTTTCATTATTTTGCAGCCTGCATGTCAGTGTAGCCTTGTCCCTTGCTTTTTAATGAGCTCTCATATGGGAAAATTTAAACTACTTATACCAAGGCATTCTCAGTGGAATTGTCAGTGTGAGCTTGAGTGCAAATTAGGAATCAAGGACCTTGGACTATTGTAACCCTGCCATGCTTGATCAAGCCCACTCCGGTATAGTATATAGGGTAAAGTGCTTAAACTAAGTTCTATTTTTGCACCTTATACAGAGAGAGTCGGAATCATTCAGGACAATAAAATGCTTGCAAGACTGGGTTTTTGTATGAGGAGAATGAAGTGCTGATTTTCCAGTGGGCAAGAGGTTCACTTCACTGTAGTCTGCATAGCAATGGTGGCTTTTGTTTATCCTCCTGGCTTCTTGCTGAGAGGATTTACCTTGTGAATACCTTTGGAGATGGAAAGCATGATACATCCCTGTCTGAAAGGGTGGAAGTGTTGAAAGCTTCAGATGTATGCACTGGAGCTCTCCTTTTCATAGCCTTCAGAATTGAGAAGCCCTTAAAGGGCAGCACTTCCTGTTTCGCTTCCAATGCAGGCAGGCTGCTGTGATACCTTGTGCACTAAAAGGCAGTTTTTGTTTTACATTTTATTGCTGAGCTCAGTGTTGGCCACGCTGGGAGGAAAATGTTAAAAACTAGTGCAACCTGGTAGGGCTGGAGAGTCAGTCCATAAAACCAGTAAAACAGCATGCATCAATGTGGCAATAAGAAAACAGTACGCTGCTGGTTATTTCAAAAGTTTTCTGTGTGAGAGTAGAGTACCCAAAGATAATAAGAAGCAGTGAAGTATTTGAGTGGTATCTAGCCTTGATGTTTCTTCACCCATACTTAGAAATGGGTGGATCCTGCTTTAACCATGACCTTTTGTTGTTTCCCGACTGGTTTGGTCTTACTGAAGTGCCAGGGTTCTAATGTTGCTGCTGTCCTAGTGTTAAGCCCCCTGTGTACAAATACTAACACCCTGTTGTTTGGTGACTGTACTAAGAGCTGTACACCATTAGATACACTGTGTAAATGGTGGCTTGGCACTCTTAACGTTGTCATCTTAAACTGAGATGCTTTTTGTAGACGAGTCACAGGTCCCCACATAGACCATTTCTCCATTTAACTTGTCTAAGATGACAAGAGTCGCTGGTGAGCCCAAGTTGGTGCTGCTTGTAATTTCTTATCATATTTAGCCTTCATGCTATGATGGTGCTTTTTCAAAGTAGGTTGCTTTCAAGTGTCATGGTGGAAACCATTTGCTATAAAAGTTCTTCTAGAGTTAAAATGGATACTGCCTCATTGCCTAATGTCTTAATAATGTGCTTGACATTTTCCTTCTATATGAGTGTATATTGCCTCATTAGGGCAGAAAGTGTGTGTGATTATGGATGTTTTCCTATATTGCCTTCAACTTCTGTTTTCTTAAGATTTTCTTCCACTACTAGGGTGTTTGTACAGCAAAAATCTTTGGACAGGTGAGGTTCTTTCTGAAATGTGGAAATTCAGACTCCCAAAATCTTCATGAACTGCATTTAATTACAGTACTAAAAATGACGTGCTCTGGAAGAACTGTCTGCTTTGGGGAGTGGAGTGTGTCTTGTGTGAGATTTTCTTGTTTCTGTTTTGGTTTTCCTTTCCCCCCTGCCAAAGCTATAGGAAGAATTTCATGAAGTATTTGTGAGCTTCGTTGAAAGGACTGGTGTGTGTGTGCGTGTGTGTGTGTCTCCATAGTATATTGTATCCAATGATTTCGAATAAGATGCAATTATAAATCAAAATAAATTATCAGAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015123:ENSGALT00000024406:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PD(33.3=91.2)
A:
NA
C2:
PF0152915=zf-DHHC=PD(20.4=45.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAACCCCATTCACAGCAT
R:
AAGTCAGTCAACGTCATCCGC
Band lengths:
357-1168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]