RnoINT0167501 @ rn6
Intron Retention
Gene
ENSRNOG00000060348 | Zdhhc23
Description
zinc finger, DHHC-type containing 23 [Source:RGD Symbol;Acc:1303254]
Coordinates
chr11:61669846-61672469:+
Coord C1 exon
chr11:61669846-61670013
Coord A exon
chr11:61670014-61672003
Coord C2 exon
chr11:61672004-61672469
Length
1990 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GAAAGGCCCTTTCTCTACAGCTC
3' ss Score
6.56
Exon sequences
Seq C1 exon
GATAAACAGCTGCGTCGGAGAATCAAACCATCAAGCGTTTATACTTGCTCTTTCCATCTTCTTGCTCACTTCGGTTTACGGAATATCGCTGACCTTGAACACCATCTGTAGGGACAGAAGCCTCTTCACAGCCCTCTTCTACTGTCCTGGAGTTTACGCTAATTACAG
Seq A exon
GTAGGTGCTGAGAGGGCCAGCCACAAAGTAGTAAGTGTTGCCAGAGATGGAGTTATTTGCTCCTATGCTAAGTTACAGTTCTCAGTCAAAGCAGAGGACAGGCTTGGGGATGGTGGGCATCCCTAAAATTGTCAGCAAAATGCTGCAGTGGTTCTGGGTGACCTTCCAGGGTAATGCCAGTCAGAAGCATGGCTGATGCCGCACACCTTTAATCCTAGCTCTGATGTGCAGAGGCAGGCAGGCGGATCTTCTTTGAGGGCGGCCAGTTCTACAAAACAAGTTCTAAAATAATGAGGACTACATAGAGGGACCCTGTTTCAACAAACAAACAAACACACACACAAACAAACAAATGCTTGGCTTTACCAGGGTCTCCCACAGCTGGGAAGCTTCTTTGTGCCTGAGGTCGCAGTGTGCTCATTTTGAGAGGTGTTTCTATCTGTGTAGCCTTTCTTTTCTCTCTAACCTCTCATGGTTTGTTCTAATTTTTATTTTTTTAATTCACCACTCATGATTACTGTGTTATCTAGGTCAAGATTTCTTAGGCATCATTAGGTGGGAACCCATTTTTAAACTGTTCAGATTCCCATGCAGTGGTGTAAGTGGGACTCTTCTGTGTTGGTCTCCCCACCCCGCCCCCTCCTGCTGAGGAAGTTCACGCCACTCCCACCCCCACACACCAGGGGTGCTCATGTCCCTCTCTCCATATATACCAAGGGTACCCATGGCACTACCACCCTTTTAGACCAGAAGTGCCCTTGCCAACCTCCATGCCACATCCCAAGGGCCCACCACTCCTGGGGTGCCTCATGTCCTTTCTCTATGTTCTTTTACTCAGTGTGGGGGTTCCATAGTCTCTGGTTGGGGTCTCTTCTTCCCTTTCACTCTTAGCTCTCAGAGCCAGTTCCTCTTTTGCTGCCAGACACCCCTGTGGTGTTAGTCCTTAATAGTCTAGATATGGACATTATAGCTATTTTGGAGTGACAGTTAGCCTTCTCTTCTTGGGGTAACTTCCTTCACTCGACATGAAAAGTCACTGACATCACAAGGCCATCATGAGGGCGGTAAGTTGGAATGCAGGATGCCTGTGTCCTTGGTGGGTTGACTCAAGTGAATCGGGCGGTGCCCAGTGTCACCATTACATCTCACCTCATCCTTGTAGTGGTTCCTGTCACCTCCACTTTATGGGGAGGTTGTGGGTTTTCATCTGTGAGTTCCCATTTAGCTTTAGAACTGCAGAGCCTATGTATGTCTTTTCCATCTAATTCTTCAAGTGCGTACCCCCTCCCCACCGTTCATGAATAAGCCCGGAAAATGTTTTCCTGCCTTGCATGATTTTGTTTGAAATGTTAGGTTCCTACAGATATTTTTTTATTTTTGAAATTTTTTATTTAATTTACGTCTATATGATTGTATGCCGAGTATGTGTGACTTCTCACAGAGCCAGGAGGGGGCATCTGAGGGGGCATCTGACCCTTAGGAATGGAGTTGCAGGTTGTGTGCTAACTCACTGTGGTGCTGGGGACTGACCTCAGGACCCTGAGCCATTTCTCCAGCCTCTTCCTGCCTGTGTGTTGAGAGTTATCCTCTTTGTGCTCAGTCTGCACTAGATTGCAGACATAACGTTAGTCCGTTCTTGGTTTCCACCTACAGCTTCTTAGAGGACACCAATAATGACTCCCTGCGACCTGTTTGCGCCTGGGTTAGCTACAAATTAGGAATTGCTCATGCATTTAACAAACAGGCGCTGAAAACCTTGATATCTGTGCAGTATAATAAGACATCCTGTGCTAAATGTAACAGGCTAGAAAACCATGGACTAACTGTCCAGAGGAGAATTGAAACAGTTCATCTGGGTTTTCACATTCTGAAGATACGAAGACATCCTTGGGAGGGGGAGAAAAGGGACGGGGGAGGGGGACGGGACTGGAGGGGGTGCTCAAGTCCTACTAATGTGCAGAAAATGTTGAGAAAGGCCCTTTCTCTACAG
Seq C2 exon
CTCAGCTCTATCCTTCACCTGCGTGTGGTACTCGGTGATCATCACAGCCGGCATGGCCTACATCTTCCTCATCCAGCTGATAAACATCAGCTACAATGTGACGGAGAGGGAAGTGCAGCAGGCCCTTCGGCAGAAGACGGGGCGCCGGCTCCTCTGTGGGCTCATTGTGGACACGGGCCAGTACAACAGGGGCTTCCTGCGCAACTGGCTCCAGTTCTCCACCCTAGGCACACGCACAGTCCACACCCCTGCCGAGGACATTGTCTAAGTGCCTTCCATGCGGCCCTGCGGGACATTCCTCGCTGTCCTTCCTGTTCACGTCAGTATCCATGCAGGACTCATCTCCACCGCCCACTTCTCGGAAGTACTGCCGAGCTACGCTCAGGTTTGGAGAGGACCGAAGAAAGGGTAACTTCTTCTGCCTTTATAACTCATGGGAGTTTTACTGAAGCAGCAAGAGTAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060348:ENSRNOT00000079423:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=FE(26.5=100)
A:
NA
C2:
PF0152915=zf-DHHC=PD(20.9=48.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTCTTCTACTGTCCTGG
R:
GTGAACAGGAAGGACAGCGAG
Band lengths:
358-2348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]