GgaINT0115193 @ galGal4
Intron Retention
Gene
ENSGALG00000015850 | SCAF4
Description
splicing factor, arginine/serine-rich 15 [Source:RefSeq peptide;Acc:NP_001012840]
Coordinates
chr1:103997220-103997588:-
Coord C1 exon
chr1:103997508-103997588
Coord A exon
chr1:103997409-103997507
Coord C2 exon
chr1:103997220-103997408
Length
99 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GTCACTGCATTGTTCCTTAGCTA
3' ss Score
5.19
Exon sequences
Seq C1 exon
GCTTTCTTCCTCCTGGACCACCCCCACCTATAACTCCTCCAGTATCTGTTCCTCACACTCCAGCAGTAAACATCCCAAACT
Seq A exon
GTAAGTGCTTAAATTCTGAGCAAGCAACGGTAGAAGGAAGCTACCATGCAAGCAGAAAAGCTGACTTATTTTTTAATATGTCACTGCATTGTTCCTTAG
Seq C2 exon
CTACAGCAGCTGGAGTAAATGAAGACACTACAAAAGATGCATCTGTAGGAAATCCCATCCCAACAGTGGTTTCTGGATCCAGAGGGAATGCTGAAACTACTGATAGTTCCAAAATATATGCGACAGTTCCACCTCCCGTAGCACCTACTAATGTACCTGCTCCTGTCACCCAAGCTATTCCGCTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850:ENSGALT00000025555:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCTTCCTCCTGGACCAC
R:
TCAGCATTCCCTCTGGATCCA
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]