HsaINT0148708 @ hg38
Intron Retention
Gene
ENSG00000156304 | SCAF4
Description
SR-related CTD associated factor 4 [Source:HGNC Symbol;Acc:HGNC:19304]
Coordinates
chr21:31685049-31685484:-
Coord C1 exon
chr21:31685398-31685484
Coord A exon
chr21:31685241-31685397
Coord C2 exon
chr21:31685049-31685240
Length
157 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
GATATAATTATATTCCTTAGCTA
3' ss Score
3.39
Exon sequences
Seq C1 exon
GTTTTCTGCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCATTCCTCCTCCTCACACTCCACCAATAAGCATCCCAAACT
Seq A exon
GTAAGCATGTTTTTTTCTTTGTGTTTGCTTATCCTCTTGGAGCTGGGTGTAGGAGGGAGAGTGAAGCGGTAATAGGATCTATAGTATGGCATAAGAATGTTGACCGGGAGATAATTAATTATTCAGCTTCACATGTTGATATAATTATATTCCTTAG
Seq C2 exon
CTACTATCGCTGGTATAAATGAAGACACTACAAAAGACTTATCTATTGGAAATCCCATTCCAACAGTGGTGTCTGGGGCTAGAGGAAACGCCGAGTCTGGTGACAGCGTGAAAATGTATGGCTCTGCCGTGCCACCTGCTGCACCCACGAATCTGCCCACCCCTCCTGTAACCCAGCCTGTTTCACTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156304:ENST00000286835:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCCCACCTCCTATAAC
R:
CTGGGTTACAGGAGGGGTGG
Band lengths:
250-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains