MmuINT0152675 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:90242772-90243203:-
Coord C1 exon
chr16:90243117-90243203
Coord A exon
chr16:90242964-90243116
Coord C2 exon
chr16:90242772-90242963
Length
153 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
TCAATGTGATTGTTCCTTAGCTA
3' ss Score
5.25
Exon sequences
Seq C1 exon
GTTTCCTTCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCATTCCTCCACCTCACACTCCACCAATAAGCATCCCAAACT
Seq A exon
GTAAGCATGTCTTTCCTCTATGCTGACTTGACGTCTTGGAGTTGGGTAGGAGGGAAAGTGAACAAATAGGAGGGTCTGTAGTCTGGTTGCAGATGGTTGACCGGGAGCATGACTAATCACTCAGCTTCACATGTCAATGTGATTGTTCCTTAG
Seq C2 exon
CTACTATCGCTGGTATAAATGAAGACACTACAAAAGACTTATCTATTGGAAATCCCATTCCAACAGTGGTGTCTGGGGCTAGAGGAAATGCCGAGTCTGGTGACAGTGCGAAAATGTATGGTTCTGCTGGGCCACCTGCTGCACCCACGAGTCTGCCCACCCCTCCTGTAACCCAGCCTGTGTCACTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
-Srsf15:NM_178923:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCACCTCCTATAACTCCA
R:
CAGTGACACAGGCTGGGTTAC
Band lengths:
258-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: