MmuALTA0015876-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000022983 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350]
Coordinates
chr16:90242772-90243203:-
Coord C1 exon
chr16:90243117-90243203
Coord A exon
chr16:90242898-90242963
Coord C2 exon
chr16:90242772-90242897
Length
66 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
TCAATGTGATTGTTCCTTAGCTA
3' ss Score
5.25
Exon sequences
Seq C1 exon
GTTTCCTTCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCATTCCTCCACCTCACACTCCACCAATAAGCATCCCAAACT
Seq A exon
CTACTATCGCTGGTATAAATGAAGACACTACAAAAGACTTATCTATTGGAAATCCCATTCCAACAG
Seq C2 exon
TGGTGTCTGGGGCTAGAGGAAATGCCGAGTCTGGTGACAGTGCGAAAATGTATGGTTCTGCTGGGCCACCTGCTGCACCCACGAGTCTGCCCACCCCTCCTGTAACCCAGCCTGTGTCACTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022983-23-25,23-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTATCCATTCCTCCACCT
R:
CAGTGACACAGGCTGGGTTAC
Band lengths:
172-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: