GgaALTA0007935-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015850 | SCAF4
Description
splicing factor, arginine/serine-rich 15 [Source:RefSeq peptide;Acc:NP_001012840]
Coordinates
chr1:103997220-103997588:-
Coord C1 exon
chr1:103997508-103997588
Coord A exon
chr1:103997403-103997408
Coord C2 exon
chr1:103997220-103997402
Length
6 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GTCACTGCATTGTTCCTTAGCTA
3' ss Score
5.19
Exon sequences
Seq C1 exon
GCTTTCTTCCTCCTGGACCACCCCCACCTATAACTCCTCCAGTATCTGTTCCTCACACTCCAGCAGTAAACATCCCAAACT
Seq A exon
CTACAG
Seq C2 exon
CAGCTGGAGTAAATGAAGACACTACAAAAGATGCATCTGTAGGAAATCCCATCCCAACAGTGGTTTCTGGATCCAGAGGGAATGCTGAAACTACTGATAGTTCCAAAATATATGCGACAGTTCCACCTCCCGTAGCACCTACTAATGTACCTGCTCCTGTCACCCAAGCTATTCCGCTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850-25-36,25-35-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTCCTCACACTCCAGCA
R:
CCACTGTTGGGATGGGATTTCC
Band lengths:
100-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]