GgaALTA0007935-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000015850 | SFRS15
Description
NA
Coordinates
chr1:108129311-108129679:-
Coord C1 exon
chr1:108129599-108129679
Coord A exon
chr1:108129494-108129499
Coord C2 exon
chr1:108129311-108129493
Length
6 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GTCACTGCATTGTTCCTTAGCTA
3' ss Score
5.19
Exon sequences
Seq C1 exon
GCTTTCTTCCTCCTGGACCACCCCCACCTATAACTCCTCCAGTATCTGTTCCTCACACTCCAGCAGTAAACATCCCAAACT
Seq A exon
CTACAG
Seq C2 exon
CAGCTGGAGTAAATGAAGACACTACAAAAGATGCATCTGTAGGAAATCCCATCCCAACAGTGGTTTCTGGATCCAGAGGGAATGCTGAAACTACTGATAGTTCCAAAATATATGCGACAGTTCCACCTCCCGTAGCACCTACTAATGTACCTGCTCCTGTCACCCAAGCTATTCCGCTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850-23-28,23-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTCCTCACACTCCAGCA
R:
CCACTGTTGGGATGGGATTTCC
Band lengths:
100-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]