HsaALTA0007713-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000156304 | SCAF4
Description
SR-related CTD associated factor 4 [Source:HGNC Symbol;Acc:HGNC:19304]
Coordinates
chr21:31685049-31685484:-
Coord C1 exon
chr21:31685398-31685484
Coord A exon
chr21:31685175-31685240
Coord C2 exon
chr21:31685049-31685174
Length
66 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
GATATAATTATATTCCTTAGCTA
3' ss Score
3.39
Exon sequences
Seq C1 exon
GTTTTCTGCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCATTCCTCCTCCTCACACTCCACCAATAAGCATCCCAAACT
Seq A exon
CTACTATCGCTGGTATAAATGAAGACACTACAAAAGACTTATCTATTGGAAATCCCATTCCAACAG
Seq C2 exon
TGGTGTCTGGGGCTAGAGGAAACGCCGAGTCTGGTGACAGCGTGAAAATGTATGGCTCTGCCGTGCCACCTGCTGCACCCACGAATCTGCCCACCCCTCCTGTAACCCAGCCTGTTTCACTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156304-30-38,30-37-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTCCTCCTCCTCACACT
R:
CAAGAAGTGAAACAGGCTGGGT
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development