GgaINT0116819 @ galGal3
Intron Retention
Gene
ENSGALG00000015842 | TIAM1
Description
NA
Coordinates
chr1:107933510-107941477:-
Coord C1 exon
chr1:107941374-107941477
Coord A exon
chr1:107933690-107941373
Coord C2 exon
chr1:107933510-107933689
Length
7684 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCTCTTTCTTGTTTTTAAAGAGT
3' ss Score
7.18
Exon sequences
Seq C1 exon
GGCATTCGCTTTGTGGCGACCCGGACAGCTCTGTTGAGACAGCACCAGAAGAGGCAGAAGCGCAAGACTTGGAGTCATCCGATGAGGCCGATAAGATGAGCAAG
Seq A exon
GTGAGAAGTTTTCATTTTCACATGCCTAAGAGCGAAAGCACAGCGTGCTCACGGCTGATGTGCTGACTTCCCAGCTACACACGATGAGAAAGTCTCTCCTGGGAAAACGTTAATCTTACTTTTAGGGTCTTTCCAGATGATACCGAATGTAACGGATCACTGCTTTCATGGTGGCACCTGGCCATCTCTTGAACAAGACTTGTACCCTTTTCCTGGGGGTGGATCATTACTGTCTTGTGTTTTTAAAAGAGCTGGTTTATCATCTTCACCAGAGCTAAACCAGAAGATCAGGTGGACTATTATGATTTCTTATTCTTTCTTGATTTCTAGGCAGGGGAGGATTGTAAGTTAAACAGTAGTTCCTTAAATCAGTAGCATAGTGCACGTGCTAGTTTTTATATGCAAACTAATTATAGCCAATCTACCTTCAATTGAAGCATAACTCTCCAATTACAGCTAAGAGGTTGTGCAAATGGATTGCTAATTGCTGTATATTAGGGGGTGGGTTTCACAGCAGTTGGTAGTTTGCTTTAGGTTGGTGTTGGGGAGCTTCACACAACATGGTCTGTGATGCTAAGTGGTTTTTGAGGCAGAATCAAGTGAGATTCTTTTAAAGGCACAGATTGTTTTTTAGGTATTTTCATGAGTAAGTGATGGTGAGATTTTATAGCTAATTTTTCCTGAGAACTTCCTGATCCTAATGAGATCTTGCTCAGTCTGTACTTACGTTGTCGGATGATTAATTTCTTAGCTTCTTGGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGTTTCAGGCTTTGTGTGGAACTAACTGATTCTTCTCTATCAGTCAGCACAATACTGGAAACCTTTCAGAGCAGAGTAATTAAGTCTTAAACATTTACTTGCCTTTGTGGTGGCCTACTTTGGCCTTTTAAATATTGTAGAATGAATGAAGGTTTTAAGGAGGTGCCCTGAAAAATGGGTATGTGTGTTAAGCACTCAGTGCTGCAGGTCGCCAAAAGACACGCCAAAACAACACGCTAAGACGCGTGTTGTGGTACATCACAAGATGAGTCTTCGTGTGTATTTTTTCCCTATAACGGTCCTCTGAAATTGATGGGGGTGGTTGAAAAACAAAACCAAACAAACTGGTAATCAGTTGTAATATTGCAGGACATCCGTTTCCCCTTGTTTTTAATTTAAGGCATCTGCCTCTTGAAACTGGAGCTAATTACCCTGCAGCACTCGTGCTTTGGGGAGTGTGCTGTAATGTCTGTGCGTGTGTACGTGTTCATACGACTTAGAGATATTTTTCCAAAGAAAATAGGTCGTCGTCTCTGTGCAACGCTGCTGAAGACCAGAATTATTAAGTCTCGTAACCTTCGGTGTGCTGCAATAGATGTGAAAGGATTAAAATGGGGATTTGAGGGGTAGGTTTGCCAGCAGCATAACCGGCTTTTTAAAGTTCCTTTAATTCTCTGCCTCTGTCCCTTCAGATGTTTAATATTCTTAGGCAGTGCAGTTCATAGCCAATTGGCTCGTGCTCCGCCACAGGCAAGAGACATTTATATTCCAGGGCTGCCTTCACCTCCCCTTTGCTGCATTTCAGCCTTTCTGCTGAAATTATCATCTGCATGTTTCCATGAAGAGCAGCGTTACATCTTCAGCTGCGACTCCTGGCCAGCCCTTAATTCCAGCTGATGTGGTGAGTGAATGAGGCCCACGGCAAACGACACACGAGGAGAGGCTCTGCCTGGATAAATACGGTCACTGCCCCTTCTTGTTAAAGCGTGGCCATCTTCTGCATGTCTCAAAGTGAGGAATATCTCTCCGGAGTGGGGGAGCGTTTCGGATCAGCTGAATATGTGGAGAGCCGGGGTTTTTCTCACAGCTGAGGCTGGAAGCACGGAGTGACAGCGCTGCCAGCACTGCCTTCCTGGCGATGTCGGCTCTGCGGAGGGTTAACCGTAAGCTCAAGAATGAAAGTGCTGTGGGATCCGGCGACTCTCTGTACCGTATGCTGTATTTGGTGAGCAAATCTACTGCTAGTCTTAAGGAATTAGCAGCTAAGCAAATTTCTGTGCCGTTTTAAATTGTGAGGTTATAGATTTGAGGCTGAGCTGTTACGCGTATACCCTGCAGAGGTGTTTTGTTATTGTGCAATGTCATTAACTGTTCTGCCAGTGCGTGAGAGAGTGCGGTTTGCCTGAGTTTTGTTTGGGAGATCGGTACTGCTTCAAGTTTGCTGTGTGGTGCAGAGCAGAGGTGTTGCACGCAGTCTGGGAAGGCATTCTGTTTGATGCCCCTGCACCTGTGTCTTTCTATAAGGGGAGCACAAGAGGAGATCGCAGTCCACTTCCACAACTGTAGGGCAGGCAGCCAAACCTCCCATCTGTGGGCATTGTTAACATGCTCAGTGAGTTAAGGACTTGCCCCTCCTGCATCAGAAGGATGTGAGCTTAGCTCCTCTGCCGAGTCCCCTGCAGAGGAGGGGTTAATGCACTGGCAAAGCAAGCCTTGCCTCGCAGCCCTGTTGTGCAAGAAGTCCAGCTCATGTCAAGGTTGCTGGATGGGACTGCTGGCAGGACTGTGCCTAAAGTAATTGCACTAATTCTGGAGAAATCGCTGTTCAGTAGCAGCTGGCAAACAGAGCTGGTGTAGGTAGGCAAAGGGTTCTGTTTCTGTTCCAGGCCTTCCCAGGAAAATGGGGACAGAGGTGCTTTTGTTTGCATTGGTTGAGAGTTTTAAGCAAACAGCAGTGTTCTGAACATCTCTGGGTCCAACATGCACCTGCTTTCTGTCAAGCAGACGATTTTTAAACATGAGGTAGCAAGGATTGTGTCCTGGAATGCAACATTTCATTCAGTGAACAAGCAAGGGAGCAGGTTTGTGAAGATAAACATGCTTGAGACTTTCTGTCTGCCTGGAGAGTACAAGATGAATGATACTTGTGGGGAAATGAGCAAAAGATGCAAGGCGTGGAAGTGGCAGGGCAGAAGTCAGAGCAGCTGCTGGCTGGAGCAGGCTCTGGGTGAAGTCAGCAAGCGTTGTACAGGGCGTGCACACGTGGAGACAAGGCTCCTACAAGTCTCCGGACTTCCTTTTTGGCCCATAGGTGTAAGCGCTCCCTCCAGGTCGGAATCTGTGCCTGTATGACAGTTATCCAATTCTCAACCACTTGTTAGCGTTCTGCTGGTGTTTCACAGTCTTAAGTGGATTTGCACTCTCTTTTTCTGGGTGACCCATCTTTCCCTGCGGCTTAATGCAAGTGAATGCACAGCACGGTGAGCTGTCTGCAGGCTGTCACACACAGACTGCTGAAAACACTTGGGGTTTTGTGGAGTTTGATTCTATGGCATGTTCTACATACTGTAACTGTTTTTAGTTGCACACTTGACTCTTAAAACGCCACTGGGTGTGACTTCCTCAAATTATTTTTACAAGAATTTCTGAGGAAAACCCAGTTTATTCTGGGTCTCTGCAGGCTTTCATTCACCACTGTTAACTGTCACTCCTTTGTCTCTTCCCAGCAGAGCAGGTAACTGAGCAGTTGGTTTTTCGCACTGCCACAGAAGCCAGGCTTTAACCTACTGCACTTCTTAGATTTGAAACTGTTGAGGTCAAGATGGTGTGTATTGAAACGTATTGCAAACCTAACCTCAAGGTTTGGGCTTGCTTTGTACTTACGAGTCTGGCAAGCATAGAGAGAAGTAAATGGAATTACACTGACTAATAAATGTGACACTTACAGACGTTCTGTTACCAGAAGCTGAATTAGTTAGAAATAAACTGACTTGACTCACTACTTTTTTTTTTTTTTAACCACACTTTTCCTTTCTGCCTGATCTGAGCTTAAATCTCATACTAAAGATGAATATTTTCCCTGTGAGCAACCGAGAGGCATTTTTATATAGGTGGTCAGCTGCCATTAGTTAATTGCTTACGGTTGTGTCCTGGCGAAAATCATCCTTTGCATAACAAGCATCTTCACTGAGATGCCTTGCAGTGGGACACTTAGGTGAGCATTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACAGGCTGCCCATGGAGGTGGTGGAGTCACCGTCCCTGGAGGTGTTGAAGAGCCGTGTGGATGTGGCACTGAGGGATGTGGGCAGTGGGCGTGGTGGGGGTGGGCTGATGGTTGGACTGGGTGATCTTAGAGGTCTTTTCCAACCTTAATGATTCTAATCTATTATCCTATGGAAGGATATCCCTTGCTTGCCACGAAGATGGTTAATATTTTCTTGAGCTTCATGGCCTAATCTTGCTGGTGATGTGTGAGCGAGTGATGCAGCTTAACAAATGCAGAGATTTTTTGGCACTGAGTCATCACAAAGGTGTGAGGTGATTCGGGTAGTTCAGGCTCCTGATGCTGCCGTTGGTACTGGCTGGTGGGAGCGATCTCCCAGTGGGCAGGGCTCTGTCTCCAAACTGTGAGGTGGTGGTGTGCTTTTTTTCTTTCTTTCTTTCTCTCTCCCCTTTCCCTACATGTTTTCTGTTTGAACAGGATAATTTGGCATAAGTCGTTTCAGTGTGGGATATAGAGGTAGTGCTGGGAAGTCTCTAAATCTGGTTTAAGATACCATGGCAGGATTAAACACAGAAGGTTAGAGAGGTGCGATCAAGTAAAGAAGCTCCTTTCCTTCCCGTGCCCTCACCGGGTCTCGGGGATGGAAGGAGATAGGGCGTGCTGCTATGCTGGCAATCCTAGAAGCCTGGGACTGTCGTCATTGACACCAGAGACTGTACCTGCTCCAAACTTTGCGGTGAAATGAAAGATGCAAGCAGGTGATCTAAGGAGAGGAGGTGAAGGGAGGATAATTCTCTTTATATAGAGACGTAATTAAACATTGAAGAAACCAGTGAGATGCAGCAGCTCTGAAAAACCTGATGCGTAAGGAGGAAATACACCCTGCAAGGTGTGTTTCCAGGCCCAGCACAAAAATGCAGGTACTTTCCAGAAAGCTTTGAAGCCTGAGGCTTTGGTTACCCAGATGGCCCTCCTCCCCTGTAAAACAACTCAGAGGGTTTCTATCGCCATGTTGTCTCTTTGGCTGTATTGACACCGCCATGTACAGGACTGTTGCAAACTAGATTAGGGAACTCGCAAAGGGCTTGGGTGTTTTGATGGCACTATCATTTTTAGTTCTCACTTCTCAGGCCCTGTTGTTTGTTTGTTTCAATCCTAAATGCTCGACAAGCCTGTTAAAGATCACATTTATTTGAAAACAGGAAGGTTACCAGACAACACTTCAGCTAACTTGAATTAGGCAACTCTTTTTCGCTTACCCTTAGACACTGAAAGAGAGGGTGGATATATATATGAAATAACGCGTGTACTTCTGGACGTTGGTGACTGCAGCTTCATAACTGCAAAGGCTTCTCAACTCCTTCGTTCCTGTAGCTCCTGCCTCAGTTATTACCACTGGCCTTTCCTCTTTCTTGTTTTTAAAG
Seq C2 exon
AGTACAGAGCAGGTCGCCGCTTTCTGTCGCAGTCTTCATGAGATGAACCCTTCTGACTCAAGTGCACATCCTCAGGAATTCACAGGACCCCAACTGGCCACCATGAGACAGCTCACAGATGCAGATAAACTGCGAAAGGTCATCTGCGAACTTCTCGAAACAGAGCGCACCTACGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842:ENSGALT00000025542:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=NA C2=0.439
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062115=RhoGEF=PU(13.3=21.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]