GgaINT0120306 @ galGal4
Intron Retention
Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61113933-61115132:-
Coord C1 exon
chr1:61115042-61115132
Coord A exon
chr1:61114020-61115041
Coord C2 exon
chr1:61113933-61114019
Length
1022 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
GCCTTCTCTTCATCCTCCAGGAG
3' ss Score
11.33
Exon sequences
Seq C1 exon
CCCTGCACACAACGCATCGGTGAAGTGTGACCGCATGCGCTCCCAGAAGCTGAGGCGGCGACCAGACACGTGCCACGCATTTCACCCCGAG
Seq A exon
GTATGGCTGTGGGCGCTGCAGTGGGGAGCCCCACACCCTGGGCCCTTTGTACATACAGCCACTGCCCCCACACGCATCGGCTGGGATATAGAATAACAGAATCAAGGTTGGAAAAGACCACTAAGATCATCCAGTCCAGTCGCCAGCCCATCCCCATTATGCCCACTGACCACGTCCCTCAGTGCCACATCCACACGGTTCTGGAACACCTCTGGGGATGGTGACCCCACCACCTCCCTGGGCAGCCTGTGCCAATGCAGCACCACTCCTTCTGAGAAGAAATTCTTCCTACTGTCCAACCTGAACCTCCCCTGGCACAGCTTGAGGCCATTATCTGTCTATCACTAACTACCTGGAAGAACACAATCTCCTTTCAGGTCATTGCAGAGAGTGATAAGGTCTCCCCTGAGCCTCCTCTTCTCCAGACTGAACAATCCCAGATCCCTCAGGCACTCCTCGTAAGACCTGTGTTCCAGACCCCTCACAGCTCCATTGCCCTTCTCTGGGCACACTCCAGGGCCTCAATGTCCTCCTTGCACTGAGGGGCCCAGAACACAGCACTCGAGGTACAGCCCCACCAGTGCTGAGTGCAGAGGGACGATCACCTCCCTACTCCTGCTAACAACACTTTCTGATACAGGCTGGGATGCCAATGGCCTTAGCCACCTGGGCACACTGCTGGCTCATGTTCAGCTGCTGTTGACCAGCACCCTCAAATCCTTTTCCTCTGTGCAGCTTTGCAGCACTCTTTCCCAAGCCTGTGGCGTTGCACGGGGTTGTGACCAAAGTGCAGGACCTGGCACTTGGCACTGCTGAAGCTGATGCAGTTGACCTCAGCCCAGTGATCCAGCCTGTCCAGACCCCTCTGTAGGGCCTTCCTACCCTGAGGGTGGGCTTTGTGCGTCCCGCTGGCTGTGGCTCCCCAGGGGGCTTCCTCATGGGGGGGAGAACACGCTGGGGATGGGCTCCCTGTCCTTCCTAGTGCCAGCAGGGCCCTCTGACGCCTTCTCTTCATCCTCCAG
Seq C2 exon
GAGAATGCCCAGGACTGTGGCGGTGCTGCTGAGCTCTCTGTCTCCCCCATGCTGCTCCTCCTGCCCCCAGCACTGCTGGTGCGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007:ENSGALT00000037501:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]