RnoINT0028210 @ rn6
Intron Retention
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151408396-151409263:+
Coord C1 exon
chr4:151408396-151408478
Coord A exon
chr4:151408479-151409158
Coord C2 exon
chr4:151409159-151409263
Length
680 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
TTACCTCTCTGGCCTTCCAGGAA
3' ss Score
11.29
Exon sequences
Seq C1 exon
ATAACGCCTCCGTCAAGTGCAACAGGATGCGCTCCCAGAAGCCCCGGAGACGACCAGGCTCCTGCCATGCCTTCCATCCCGAG
Seq A exon
GTGCGGGCTGTGAACTGAGAGGCGTGGTCTTCGACCCCTAATTATGTTCTGTGTGCGGCTTCTTGGGACGTGAATGTTTCTAGACTCTGATGACACGGCTGTATGTGTCCCTCCCGCTGGGAGAGCCCTGCATTCACAATTATGTTGTGTGAGACACGAAATAAGGGACGGTGGCAAGCAAGGGAGTTCCAGGTCAGTTGCAGGGAGCGGGGGCGAGGGGCAAAGGAAAATGGAGAGAAAGGAGAAAGGACCAAGGGTATCTGTACTTCCTAGGGCCTGGGGCTGAGTGAGCTTCCCCTGAAATCCTTACTCCTGCTACCTCAGCGCTACTCACCGTGACTTGGTCAGTGACAACAGAGATTGGAATTTATTAAGCCCTAAGCTAGGGACCTTCCTACCCAGTCTCAGCTGGGTGTGGCTGCTGGGGCAAACTATGGCCCCAGAGGTGCTCTCGGAGATGATGTCTGCTCCACACAATAATGAAAGGAAGGCCCTAAAGATTTAAGCAAGCAGTCTCTACTGTCCCTAAGAGCTCGAAAAAAAGGTAGCTTTCGCCTCCTCTTTGAAACCTCGCCATCCCCCAGGCTGCTCTGTCTGTGTGCATCCATGCTGTGCACGCCAGCCCTTGGGCTGGGAGGGCCACCTCTCTCCTAACGCCTCTTACCTCTCTGGCCTTCCAG
Seq C2 exon
GAAAATGCCCAGGACTGTGGCGGTGCTTCAGACACTCTGCCTTCATCCCCTCTGCTCCTGCTGGCACTGTGGGCCTGGCGTCTTCCGCCCCAGCTTCTGTGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031:ENSRNOT00000010746:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]