GgaINT0121508 @ galGal4
Intron Retention
Gene
ENSGALG00000015459 | ZFP92
Description
zinc finger protein 92 homolog [Source:RefSeq peptide;Acc:NP_001012839]
Coordinates
chr1:91250449-91252352:-
Coord C1 exon
chr1:91252196-91252352
Coord A exon
chr1:91250540-91252195
Coord C2 exon
chr1:91250449-91250539
Length
1656 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATTTTGTTTGCTTTTATAAGGAG
3' ss Score
4.79
Exon sequences
Seq C1 exon
CTTTGTGCCCGAGGGTGACCATGCAGAGAACGCTCAGCCAGCGACGGCACTTCGGGAGCAGACTGAGGGACCCCGAGGAACCTGAGAGATGGAACTCTACGCTGGGATGACTCCCACAGCCTCCATGGTCCGATGCAGCCACAGGATAACTATGGAG
Seq A exon
GTGAGTGGTCAGGAGAGAAAATGAAGAGCCGTCGGCAAACAGCTGAGGTAAAGGCAATGAATTGTTGGTCCTTGGAGGACTGTCTCCTCTGTTGGTGAGATCGGTCTCCTCCTTTCACAGAGAGAGGACTGATCCTGGGAAAGGAGGAAACTCTTCTTACTCCAGGCTAGCCTGTCAATGTACGAGGACTGTCTGCTTTTTGCTGAGCTGCCATAGTAAATCTGAGCACAGCAGCCATGCGTCAGGAGGTCTTTGCAGGGTCAGAAGTGAACTCTTCCTTCTGCCTTGTTTGCATGCTTTGAGACTTCCCCTGGTAGTTGTGGTCAGACACTTATCACGATGCTGGTACCACCTCTGAAGTGCCAACAGTTCTCCTTCTCTGCATTTCCCGTTTGTACACCCTGCTGTTTGTGGTTAGCTGCTTGGGGAAAAGGCCTGTGTGTGCATGGGGCTTTGGCTCCTGCTTTCAGGTAGAACAGGCCATCTGGTACACACTGCAGCATGTCACTGGCTGGGTTGGCTCCTACCATCCATCTGCTGCAACGGAGATTCTCAGTAGTGGCAAAGTTCTGATTGCTGTAGGCCTCCCGAAAGCAACCTAACGTTGTGTGTTGGCTCAGGACAGCCTGAAATGGCACATCTGCAGGGATGGTCCCCATCAACATTCAGCAGAGATTTAAAGTAGGCACTCAGCTTCTTTTCCTTTCCCCTTTTCCTTTCTTCATCGTTCTGTAGTTCAGTAAGTCTTTCTCTTTTGCTCTCTCCCTTTCTTTCTGTCCAGCTTTGCCACCCAAGATCACAGACTTTAAGATTGGCATCTGAGGTCCAAGACCATTCCCCTCATCTGAGTTATCTCCTTAGTTCTGATGCTATCTCATCTCTTATTACCCTTCATTAAATAGCTGTCGGTGATGGATGAAGCAGTCCACAACAAAACACCCATCACTTTACATCTTATTATTTATTTATTTTCTCTGTTCTCCTGCATTTTTTTCTGCAGCAATTGCCAGTGCCTACCTTTTGTGCTGGCAGCGTTTATAAGACCAACTTGCCCAATAATTGCATTTGTGGCAATTGTTGGAGTTGCCAAGTAGGCATCTGCCAGAATCCAGTAGGAATAGACATGACATCATATTGCCTGTTTTGTTGGTTTAGCTGCCTCAGCCTGAGAGTCTTTCCTTGGAGGAGAAAGAAGAGTTAAGAGAGCAAGTAAGAAAATCATGCTCTGATGACTACAGAGTCATTTTCCATTTAGAATAATTTTAAAACAGTAATTAGTCTCGTGGTTGTCGTTATTACAGAAATGTCTCCAATTCAACATGCAGATGTGGCTGAGTTTTGCTTTTTCCTTATAACTATAGCTATTGTTGCTGTCAACCAATTCTGAGTCCAGTGCATCTGGTGTATGTCCTCATGTACTGGTCATCAGAAGAGAGGCAACCTTAAATGTCCTATAAGAAAATAAAACATATCTGACATCAGGTACCTCACTAGTGCACAGGATGCCCATAAACGTTTGTTGCTCAGATGGTGCCATTCTTTTAAGCACTTTCTCCATCTGTTCCCTGTATTCAGCAGGGGGAGTAGATTTTAAGGCATACTACGTGACACTATTGCTGAATATTAACTAAGATTAATTTTGTTTGCTTTTATAAG
Seq C2 exon
GAGGATTCCTGATTGGTGAACCTGACATAACCTGCCCAGATGGACCAAGGAGAAGATCAAGATCACGAGGCCTCAAAGGAGATGCACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015459:ENSGALT00000024926:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGCCCGAGGGTGAC
R:
ATGTGCATCTCCTTTGAGGCC
Band lengths:
246-1902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]